Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G38960

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0010243: response to organonitrogen compound0.00E+00
2GO:0042908: xenobiotic transport0.00E+00
3GO:0019379: sulfate assimilation, phosphoadenylyl sulfate reduction by phosphoadenylyl-sulfate reductase (thioredoxin)0.00E+00
4GO:0042754: negative regulation of circadian rhythm8.72E-08
5GO:0007623: circadian rhythm2.66E-07
6GO:0071483: cellular response to blue light1.60E-06
7GO:0009909: regulation of flower development1.71E-06
8GO:0048574: long-day photoperiodism, flowering1.49E-05
9GO:1902418: (+)-abscisic acid D-glucopyranosyl ester transmembrane transport3.64E-05
10GO:0043100: pyrimidine nucleobase salvage9.09E-05
11GO:1902066: regulation of cell wall pectin metabolic process9.09E-05
12GO:0051511: negative regulation of unidimensional cell growth9.09E-05
13GO:0006898: receptor-mediated endocytosis9.09E-05
14GO:0043496: regulation of protein homodimerization activity9.09E-05
15GO:0071230: cellular response to amino acid stimulus1.58E-04
16GO:0044375: regulation of peroxisome size1.58E-04
17GO:0016570: histone modification1.58E-04
18GO:0019419: sulfate reduction1.58E-04
19GO:0009739: response to gibberellin2.23E-04
20GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity2.33E-04
21GO:0015700: arsenite transport2.33E-04
22GO:0009902: chloroplast relocation3.14E-04
23GO:0010600: regulation of auxin biosynthetic process3.14E-04
24GO:0009904: chloroplast accumulation movement4.01E-04
25GO:0010236: plastoquinone biosynthetic process4.01E-04
26GO:0009723: response to ethylene4.14E-04
27GO:0009903: chloroplast avoidance movement5.88E-04
28GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway6.87E-04
29GO:0006368: transcription elongation from RNA polymerase II promoter6.87E-04
30GO:0070370: cellular heat acclimation6.87E-04
31GO:0009751: response to salicylic acid7.23E-04
32GO:0031540: regulation of anthocyanin biosynthetic process7.90E-04
33GO:0016559: peroxisome fission7.90E-04
34GO:0030091: protein repair7.90E-04
35GO:0009753: response to jasmonic acid8.03E-04
36GO:0006355: regulation of transcription, DNA-templated8.26E-04
37GO:0009585: red, far-red light phototransduction8.60E-04
38GO:0010100: negative regulation of photomorphogenesis8.97E-04
39GO:0046685: response to arsenic-containing substance1.01E-03
40GO:0000103: sulfate assimilation1.24E-03
41GO:0000272: polysaccharide catabolic process1.36E-03
42GO:0006816: calcium ion transport1.36E-03
43GO:0009416: response to light stimulus1.49E-03
44GO:0009785: blue light signaling pathway1.62E-03
45GO:0007015: actin filament organization1.76E-03
46GO:0007031: peroxisome organization1.89E-03
47GO:0006351: transcription, DNA-templated2.14E-03
48GO:0051017: actin filament bundle assembly2.18E-03
49GO:0019344: cysteine biosynthetic process2.18E-03
50GO:0008299: isoprenoid biosynthetic process2.33E-03
51GO:0006874: cellular calcium ion homeostasis2.33E-03
52GO:0010017: red or far-red light signaling pathway2.64E-03
53GO:0040007: growth2.80E-03
54GO:0009658: chloroplast organization3.13E-03
55GO:0042631: cellular response to water deprivation3.30E-03
56GO:0042752: regulation of circadian rhythm3.64E-03
57GO:0009851: auxin biosynthetic process3.82E-03
58GO:0080167: response to karrikin3.87E-03
59GO:0009630: gravitropism4.19E-03
60GO:0009733: response to auxin4.20E-03
61GO:0006464: cellular protein modification process4.56E-03
62GO:0009567: double fertilization forming a zygote and endosperm4.56E-03
63GO:0045454: cell redox homeostasis4.62E-03
64GO:0045892: negative regulation of transcription, DNA-templated4.70E-03
65GO:0018298: protein-chromophore linkage6.18E-03
66GO:0008152: metabolic process6.27E-03
67GO:0046686: response to cadmium ion6.36E-03
68GO:0006811: ion transport6.61E-03
69GO:0045087: innate immune response7.28E-03
70GO:0009637: response to blue light7.28E-03
71GO:0009640: photomorphogenesis8.68E-03
72GO:0009737: response to abscisic acid9.46E-03
73GO:0006855: drug transmembrane transport9.68E-03
74GO:0010224: response to UV-B1.10E-02
75GO:0045893: positive regulation of transcription, DNA-templated1.16E-02
76GO:0055085: transmembrane transport1.28E-02
77GO:0055114: oxidation-reduction process1.35E-02
78GO:0009651: response to salt stress1.68E-02
79GO:0010468: regulation of gene expression2.29E-02
80GO:0009409: response to cold2.78E-02
81GO:0010200: response to chitin3.30E-02
82GO:0015979: photosynthesis3.54E-02
83GO:0006281: DNA repair4.25E-02
RankGO TermAdjusted P value
1GO:0047501: (+)-neomenthol dehydrogenase activity0.00E+00
2GO:0015205: nucleobase transmembrane transporter activity0.00E+00
3GO:0047504: (-)-menthol dehydrogenase activity0.00E+00
4GO:0008106: alcohol dehydrogenase (NADP+) activity8.23E-07
5GO:0042802: identical protein binding1.57E-05
6GO:0071992: phytochelatin transmembrane transporter activity3.64E-05
7GO:1902417: (+)-abscisic acid D-glucopyranosyl ester transmembrane transporter activity3.64E-05
8GO:0004719: protein-L-isoaspartate (D-aspartate) O-methyltransferase activity3.64E-05
9GO:0008066: glutamate receptor activity3.64E-05
10GO:0015446: ATPase-coupled arsenite transmembrane transporter activity3.64E-05
11GO:0033741: adenylyl-sulfate reductase (glutathione) activity9.09E-05
12GO:0050347: trans-octaprenyltranstransferase activity9.09E-05
13GO:0052924: all-trans-nonaprenyl-diphosphate synthase (geranylgeranyl-diphosphate specific) activity9.09E-05
14GO:0009973: adenylyl-sulfate reductase activity9.09E-05
15GO:1990269: RNA polymerase II C-terminal domain phosphoserine binding9.09E-05
16GO:0004604: phosphoadenylyl-sulfate reductase (thioredoxin) activity9.09E-05
17GO:0016491: oxidoreductase activity1.47E-04
18GO:0001076: transcription factor activity, RNA polymerase II transcription factor binding1.58E-04
19GO:0003913: DNA photolyase activity1.58E-04
20GO:0003700: transcription factor activity, sequence-specific DNA binding2.10E-04
21GO:0016161: beta-amylase activity5.88E-04
22GO:0009881: photoreceptor activity6.87E-04
23GO:0030674: protein binding, bridging7.90E-04
24GO:0000989: transcription factor activity, transcription factor binding1.01E-03
25GO:0003677: DNA binding1.05E-03
26GO:0019904: protein domain specific binding1.36E-03
27GO:0008559: xenobiotic-transporting ATPase activity1.36E-03
28GO:0005262: calcium channel activity1.62E-03
29GO:0004970: ionotropic glutamate receptor activity1.89E-03
30GO:0005217: intracellular ligand-gated ion channel activity1.89E-03
31GO:0008270: zinc ion binding2.98E-03
32GO:0004527: exonuclease activity3.47E-03
33GO:0010181: FMN binding3.64E-03
34GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor4.37E-03
35GO:0004871: signal transducer activity4.84E-03
36GO:0005515: protein binding4.89E-03
37GO:0008236: serine-type peptidase activity5.97E-03
38GO:0015035: protein disulfide oxidoreductase activity1.40E-02
39GO:0042626: ATPase activity, coupled to transmembrane movement of substances2.40E-02
40GO:0003682: chromatin binding2.87E-02
41GO:0004672: protein kinase activity3.02E-02
42GO:0016787: hydrolase activity4.38E-02
43GO:0009055: electron carrier activity4.46E-02
44GO:0004519: endonuclease activity4.51E-02
RankGO TermAdjusted P value
1GO:0031313: extrinsic component of endosome membrane0.00E+00
2GO:0031234: extrinsic component of cytoplasmic side of plasma membrane3.64E-05
3GO:0016593: Cdc73/Paf1 complex3.14E-04
4GO:0009526: plastid envelope3.14E-04
5GO:0031982: vesicle7.90E-04
6GO:0005779: integral component of peroxisomal membrane8.97E-04
7GO:0005834: heterotrimeric G-protein complex1.07E-03
8GO:0005884: actin filament1.36E-03
9GO:0080008: Cul4-RING E3 ubiquitin ligase complex3.43E-03
10GO:0005778: peroxisomal membrane4.75E-03
11GO:0000325: plant-type vacuole6.83E-03
12GO:0005777: peroxisome1.16E-02
13GO:0009505: plant-type cell wall2.57E-02
14GO:0031969: chloroplast membrane3.22E-02
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Gene type



Gene DE type