gene detail

Gene description

TAIR ID: AT4G30400

Short description: RING/U-box superfamily protein

Pathogen responsiveness: -0.22

General responsiveness: -2.06

Orthologous

Rice: No orthologous gene

Maize:

GRMZM2G122284

Wheat: No orthologous gene

GO biological process

response to karrikin, protein ubiquitination

GO cellular component

nucleus, integral component of membrane

GO molecular function

metal ion binding

Protein domain

Pfam	PF13639, Ring finger domain
SMART	SM00184, RING

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

Not involved in KEGG pathway

Transcriptional regulation

Regulator:
AT1G24260, AT2G43010

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 1

click to view PPI network

Coexpression network

GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE56094_WT_HRPA-  view
GSE45212_MED14_PSTDC3000_AVRRPT2  view

Differentially expressed condition

20 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE17500	Col, 35S:AFB1, control 0 h	Col, 35S:AFB1, PstDC3000 24 h	-1.99	1.16E-04
GSE17500	Col, WT, control 0 h	Col, WT, PstDC3000 24 h	-1.90	9.96E-05
GSE17500	Col, miR393, control 0 h	Col, miR393, PstDC3000 24 h	-1.93	1.23E-04
GSE18978	Col, WT, control 24 h	Col, WT, PsmES4326 24 h	-2.48	1.09E-09
GSE37269	St0, WT, control	St0, WT, TEV 21 d	-2.48	4.90E-04
GSE40544	Col, WT, control	Col, WT, PstDC3000 AvrRpt2	-2.46	1.44E-03
GSE40544	Col, WT, control	Col, WT, PstDC3000 EV	-2.75	5.14E-04
GSE40544	Col, Sid2, control	Col, Sid2, PstDC3000 AvrRpt2	-2.36	2.11E-03
GSE40544	Col, Sid2, control	Col, Sid2, PstDC3000 EV	-2.25	6.49E-03
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 12 h	-2.28	1.69E-16
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 8 h	-2.05	7.61E-16
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 12 h	-1.70	4.98E-15
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 4 h	-1.90	1.26E-15
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 8 h	-1.94	8.62E-16
GSE45214	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 4 h	-1.61	1.08E-11
GSE45214	Col, med16, PstDC3000 AvrRpt2 0 h	Col, med16, PstDC3000 AvrRpt2 4 h	-2.22	4.14E-14
GSE5520	Col, WT, control 10 h	Col, WT, Cor- 10 h	-1.69	5.99E-04
GSE5520	Col, WT, control 24 h	Col, WT, PstDC3000 24 h	-1.69	1.46E-03
GSE58954	Col, WT, Psm AvrRpt2 0 h	Col, WT, Psm AvrRpt2 6 h	-1.95	4.08E-03
GSE9674	Ws-4, AtMYB30 ox, control	Ws-4, AtMYB30 ox, Xanthomonas strain Xcc147 6 h	-1.72	3.28E-03