gene detail

Gene description

TAIR ID: AT4G29140

Short description: MATE efflux family protein

Pathogen responsiveness: -1.65

General responsiveness: -0.64

Orthologous

Rice: No orthologous gene

Maize:

GRMZM2G423884

Wheat: No orthologous gene

GO biological process

root morphogenesis, defense response, drug transmembrane transport, negative regulation of defense response, auxin homeostasis, regulation of organ growth

GO cellular component

late endosome, late endosome membrane, membrane, plasma membrane, endosome membrane, integral component of membrane

GO molecular function

transporter activity, drug transmembrane transporter activity, antiporter activity

Protein domain

Pfam	PF01554, MatE

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

Not involved in KEGG pathway

Transcriptional regulation

Regulator:
AT5G07100, AT5G13790, AT5G22570, AT2G46130, AT5G61850, AT2G43010

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 16 (Top20%)

click to view PPI network

Coexpression network

GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE13739_EDS16_GO  view
GSE45212_MED14_PSTDC3000_AVRRPT2  view

Differentially expressed condition

6 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE37269	St0, WT, control	St0, WT, TEV 21 d	-1.83	3.75E-03
GSE40544	Col, WT, control	Col, WT, PstDC3000 AvrRpt2	-1.66	6.48E-04
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 12 h	-1.56	1.52E-14
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 12 h	-2.03	6.19E-16
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 4 h	-1.57	1.85E-14
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 8 h	-1.95	9.00E-16