co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G29140

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
2	GO:0017038: protein import	0.00E+00
3	GO:0006428: isoleucyl-tRNA aminoacylation	0.00E+00
4	GO:0019379: sulfate assimilation, phosphoadenylyl sulfate reduction by phosphoadenylyl-sulfate reductase (thioredoxin)	0.00E+00
5	GO:2000042: negative regulation of double-strand break repair via homologous recombination	0.00E+00
6	GO:0042407: cristae formation	0.00E+00
7	GO:0018023: peptidyl-lysine trimethylation	0.00E+00
8	GO:0031222: arabinan catabolic process	0.00E+00
9	GO:0061157: mRNA destabilization	0.00E+00
10	GO:0043392: negative regulation of DNA binding	0.00E+00
11	GO:0018026: peptidyl-lysine monomethylation	7.41E-06
12	GO:0009658: chloroplast organization	2.98E-04
13	GO:0000025: maltose catabolic process	4.07E-04
14	GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process	4.07E-04
15	GO:0080112: seed growth	4.07E-04
16	GO:0005980: glycogen catabolic process	4.07E-04
17	GO:1905039: carboxylic acid transmembrane transport	4.07E-04
18	GO:0030198: extracellular matrix organization	4.07E-04
19	GO:1905200: gibberellic acid transmembrane transport	4.07E-04
20	GO:0046520: sphingoid biosynthetic process	4.07E-04
21	GO:0010480: microsporocyte differentiation	4.07E-04
22	GO:0042371: vitamin K biosynthetic process	4.07E-04
23	GO:0043686: co-translational protein modification	4.07E-04
24	GO:0043007: maintenance of rDNA	4.07E-04
25	GO:1902458: positive regulation of stomatal opening	4.07E-04
26	GO:0015904: tetracycline transport	4.07E-04
27	GO:0005991: trehalose metabolic process	4.07E-04
28	GO:0000305: response to oxygen radical	4.07E-04
29	GO:0000023: maltose metabolic process	4.07E-04
30	GO:0010182: sugar mediated signaling pathway	5.29E-04
31	GO:0009629: response to gravity	8.83E-04
32	GO:1902326: positive regulation of chlorophyll biosynthetic process	8.83E-04
33	GO:0007154: cell communication	8.83E-04
34	GO:0006423: cysteinyl-tRNA aminoacylation	8.83E-04
35	GO:0071497: cellular response to freezing	8.83E-04
36	GO:1900033: negative regulation of trichome patterning	8.83E-04
37	GO:1904143: positive regulation of carotenoid biosynthetic process	8.83E-04
38	GO:1903426: regulation of reactive oxygen species biosynthetic process	8.83E-04
39	GO:0006568: tryptophan metabolic process	8.83E-04
40	GO:0010024: phytochromobilin biosynthetic process	8.83E-04
41	GO:0009416: response to light stimulus	9.33E-04
42	GO:0009773: photosynthetic electron transport in photosystem I	1.10E-03
43	GO:0005983: starch catabolic process	1.25E-03
44	GO:0010588: cotyledon vascular tissue pattern formation	1.42E-03
45	GO:0019419: sulfate reduction	1.43E-03
46	GO:0006788: heme oxidation	1.43E-03
47	GO:0006696: ergosterol biosynthetic process	1.43E-03
48	GO:0033591: response to L-ascorbic acid	1.43E-03
49	GO:0010306: rhamnogalacturonan II biosynthetic process	2.07E-03
50	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	2.07E-03
51	GO:0006168: adenine salvage	2.07E-03
52	GO:0043572: plastid fission	2.07E-03
53	GO:0090308: regulation of methylation-dependent chromatin silencing	2.07E-03
54	GO:0010321: regulation of vegetative phase change	2.07E-03
55	GO:0010371: regulation of gibberellin biosynthetic process	2.07E-03
56	GO:0045338: farnesyl diphosphate metabolic process	2.07E-03
57	GO:0006166: purine ribonucleoside salvage	2.07E-03
58	GO:0009102: biotin biosynthetic process	2.07E-03
59	GO:0006749: glutathione metabolic process	2.78E-03
60	GO:1901141: regulation of lignin biosynthetic process	2.78E-03
61	GO:0048629: trichome patterning	2.78E-03
62	GO:0010109: regulation of photosynthesis	2.78E-03
63	GO:0042274: ribosomal small subunit biogenesis	2.78E-03
64	GO:0010236: plastoquinone biosynthetic process	3.56E-03
65	GO:0045038: protein import into chloroplast thylakoid membrane	3.56E-03
66	GO:0031365: N-terminal protein amino acid modification	3.56E-03
67	GO:0044209: AMP salvage	3.56E-03
68	GO:0080022: primary root development	4.11E-03
69	GO:0010087: phloem or xylem histogenesis	4.11E-03
70	GO:0016554: cytidine to uridine editing	4.41E-03
71	GO:1902456: regulation of stomatal opening	4.41E-03
72	GO:0042793: transcription from plastid promoter	4.41E-03
73	GO:0018258: protein O-linked glycosylation via hydroxyproline	4.41E-03
74	GO:0000741: karyogamy	4.41E-03
75	GO:0010405: arabinogalactan protein metabolic process	4.41E-03
76	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	4.41E-03
77	GO:0009959: negative gravitropism	4.41E-03
78	GO:0006662: glycerol ether metabolic process	4.43E-03
79	GO:0010197: polar nucleus fusion	4.43E-03
80	GO:0009741: response to brassinosteroid	4.43E-03
81	GO:0009646: response to absence of light	4.76E-03
82	GO:0042372: phylloquinone biosynthetic process	5.31E-03
83	GO:0042026: protein refolding	5.31E-03
84	GO:0006458: 'de novo' protein folding	5.31E-03
85	GO:0048280: vesicle fusion with Golgi apparatus	5.31E-03
86	GO:0048509: regulation of meristem development	5.31E-03
87	GO:2000033: regulation of seed dormancy process	5.31E-03
88	GO:1901259: chloroplast rRNA processing	5.31E-03
89	GO:0030488: tRNA methylation	5.31E-03
90	GO:0009955: adaxial/abaxial pattern specification	5.31E-03
91	GO:0048367: shoot system development	5.43E-03
92	GO:0010583: response to cyclopentenone	5.85E-03
93	GO:0032502: developmental process	5.85E-03
94	GO:1901657: glycosyl compound metabolic process	6.23E-03
95	GO:0048437: floral organ development	6.28E-03
96	GO:0010161: red light signaling pathway	6.28E-03
97	GO:0009772: photosynthetic electron transport in photosystem II	6.28E-03
98	GO:0009828: plant-type cell wall loosening	6.64E-03
99	GO:0009742: brassinosteroid mediated signaling pathway	7.11E-03
100	GO:0006605: protein targeting	7.30E-03
101	GO:0010078: maintenance of root meristem identity	7.30E-03
102	GO:0070413: trehalose metabolism in response to stress	7.30E-03
103	GO:2000070: regulation of response to water deprivation	7.30E-03
104	GO:0000105: histidine biosynthetic process	7.30E-03
105	GO:0052543: callose deposition in cell wall	7.30E-03
106	GO:0010027: thylakoid membrane organization	7.93E-03
107	GO:0007186: G-protein coupled receptor signaling pathway	8.38E-03
108	GO:0009657: plastid organization	8.38E-03
109	GO:0010100: negative regulation of photomorphogenesis	8.38E-03
110	GO:0043562: cellular response to nitrogen levels	8.38E-03
111	GO:0010099: regulation of photomorphogenesis	8.38E-03
112	GO:0015996: chlorophyll catabolic process	8.38E-03
113	GO:0015995: chlorophyll biosynthetic process	9.35E-03
114	GO:0010206: photosystem II repair	9.51E-03
115	GO:0006783: heme biosynthetic process	9.51E-03
116	GO:0045454: cell redox homeostasis	1.04E-02
117	GO:1900865: chloroplast RNA modification	1.07E-02
118	GO:0031425: chloroplast RNA processing	1.07E-02
119	GO:0009638: phototropism	1.07E-02
120	GO:0043067: regulation of programmed cell death	1.07E-02
121	GO:0010162: seed dormancy process	1.19E-02
122	GO:0006896: Golgi to vacuole transport	1.19E-02
123	GO:0000103: sulfate assimilation	1.19E-02
124	GO:0045036: protein targeting to chloroplast	1.19E-02
125	GO:0009641: shade avoidance	1.19E-02
126	GO:0016441: posttranscriptional gene silencing	1.19E-02
127	GO:0009073: aromatic amino acid family biosynthetic process	1.32E-02
128	GO:0015770: sucrose transport	1.32E-02
129	GO:0048229: gametophyte development	1.32E-02
130	GO:0010216: maintenance of DNA methylation	1.32E-02
131	GO:0009684: indoleacetic acid biosynthetic process	1.32E-02
132	GO:0000038: very long-chain fatty acid metabolic process	1.32E-02
133	GO:0016042: lipid catabolic process	1.36E-02
134	GO:0034599: cellular response to oxidative stress	1.38E-02
135	GO:0045037: protein import into chloroplast stroma	1.46E-02
136	GO:0030048: actin filament-based movement	1.59E-02
137	GO:0010102: lateral root morphogenesis	1.59E-02
138	GO:0010628: positive regulation of gene expression	1.59E-02
139	GO:0006006: glucose metabolic process	1.59E-02
140	GO:0010075: regulation of meristem growth	1.59E-02
141	GO:0009767: photosynthetic electron transport chain	1.59E-02
142	GO:0009640: photomorphogenesis	1.70E-02
143	GO:0048467: gynoecium development	1.74E-02
144	GO:0010207: photosystem II assembly	1.74E-02
145	GO:0010020: chloroplast fission	1.74E-02
146	GO:0009266: response to temperature stimulus	1.74E-02
147	GO:0009934: regulation of meristem structural organization	1.74E-02
148	GO:0009901: anther dehiscence	1.88E-02
149	GO:0019853: L-ascorbic acid biosynthetic process	1.88E-02
150	GO:0010030: positive regulation of seed germination	1.88E-02
151	GO:0006855: drug transmembrane transport	1.99E-02
152	GO:0000162: tryptophan biosynthetic process	2.04E-02
153	GO:0006071: glycerol metabolic process	2.04E-02
154	GO:0019762: glucosinolate catabolic process	2.04E-02
155	GO:0080147: root hair cell development	2.19E-02
156	GO:0010187: negative regulation of seed germination	2.19E-02
157	GO:0005992: trehalose biosynthetic process	2.19E-02
158	GO:0019344: cysteine biosynthetic process	2.19E-02
159	GO:0006418: tRNA aminoacylation for protein translation	2.35E-02
160	GO:0019953: sexual reproduction	2.35E-02
161	GO:0006355: regulation of transcription, DNA-templated	2.40E-02
162	GO:0061077: chaperone-mediated protein folding	2.51E-02
163	GO:0048278: vesicle docking	2.51E-02
164	GO:0048511: rhythmic process	2.51E-02
165	GO:0010431: seed maturation	2.51E-02
166	GO:0009909: regulation of flower development	2.55E-02
167	GO:0006730: one-carbon metabolic process	2.68E-02
168	GO:0030245: cellulose catabolic process	2.68E-02
169	GO:0048366: leaf development	2.83E-02
170	GO:0009686: gibberellin biosynthetic process	2.85E-02
171	GO:0006012: galactose metabolic process	2.85E-02
172	GO:0010091: trichome branching	3.03E-02
173	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	3.15E-02
174	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	3.21E-02
175	GO:0042147: retrograde transport, endosome to Golgi	3.21E-02
176	GO:0016117: carotenoid biosynthetic process	3.21E-02
177	GO:0009555: pollen development	3.34E-02
178	GO:0042631: cellular response to water deprivation	3.39E-02
179	GO:0042335: cuticle development	3.39E-02
180	GO:0010118: stomatal movement	3.39E-02
181	GO:0048653: anther development	3.39E-02
182	GO:0009958: positive gravitropism	3.58E-02
183	GO:0010305: leaf vascular tissue pattern formation	3.58E-02
184	GO:0048868: pollen tube development	3.58E-02
185	GO:0061025: membrane fusion	3.77E-02
186	GO:0042752: regulation of circadian rhythm	3.77E-02
187	GO:0006623: protein targeting to vacuole	3.96E-02
188	GO:0048825: cotyledon development	3.96E-02
189	GO:0009851: auxin biosynthetic process	3.96E-02
190	GO:0030154: cell differentiation	4.04E-02
191	GO:0006891: intra-Golgi vesicle-mediated transport	4.15E-02
192	GO:0010090: trichome morphogenesis	4.55E-02
193	GO:0009790: embryo development	4.76E-02
194	GO:0006457: protein folding	4.83E-02

Rank	GO Term	Adjusted P value
1	GO:0010349: L-galactose dehydrogenase activity	0.00E+00
2	GO:0005363: maltose transmembrane transporter activity	0.00E+00
3	GO:0090711: FMN hydrolase activity	0.00E+00
4	GO:0071633: dihydroceramidase activity	0.00E+00
5	GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity	0.00E+00
6	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
7	GO:0004822: isoleucine-tRNA ligase activity	0.00E+00
8	GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity	0.00E+00
9	GO:0005201: extracellular matrix structural constituent	0.00E+00
10	GO:0004076: biotin synthase activity	0.00E+00
11	GO:0016279: protein-lysine N-methyltransferase activity	9.87E-05
12	GO:1905201: gibberellin transmembrane transporter activity	4.07E-04
13	GO:0008184: glycogen phosphorylase activity	4.07E-04
14	GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity	4.07E-04
15	GO:0004856: xylulokinase activity	4.07E-04
16	GO:0004134: 4-alpha-glucanotransferase activity	4.07E-04
17	GO:0004645: phosphorylase activity	4.07E-04
18	GO:0042586: peptide deformylase activity	4.07E-04
19	GO:0005080: protein kinase C binding	4.07E-04
20	GO:0010313: phytochrome binding	4.07E-04
21	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	4.07E-04
22	GO:0000170: sphingosine hydroxylase activity	4.07E-04
23	GO:0050139: nicotinate-N-glucosyltransferase activity	4.07E-04
24	GO:0004425: indole-3-glycerol-phosphate synthase activity	4.07E-04
25	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	8.16E-04
26	GO:0009973: adenylyl-sulfate reductase activity	8.83E-04
27	GO:0042284: sphingolipid delta-4 desaturase activity	8.83E-04
28	GO:0080097: L-tryptophan:pyruvate aminotransferase activity	8.83E-04
29	GO:0004604: phosphoadenylyl-sulfate reductase (thioredoxin) activity	8.83E-04
30	GO:0008493: tetracycline transporter activity	8.83E-04
31	GO:0004310: farnesyl-diphosphate farnesyltransferase activity	8.83E-04
32	GO:0004362: glutathione-disulfide reductase activity	8.83E-04
33	GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity	8.83E-04
34	GO:0033741: adenylyl-sulfate reductase (glutathione) activity	8.83E-04
35	GO:0004817: cysteine-tRNA ligase activity	8.83E-04
36	GO:0003913: DNA photolyase activity	1.43E-03
37	GO:0002161: aminoacyl-tRNA editing activity	1.43E-03
38	GO:0015462: ATPase-coupled protein transmembrane transporter activity	1.43E-03
39	GO:0003999: adenine phosphoribosyltransferase activity	2.07E-03
40	GO:0016851: magnesium chelatase activity	2.07E-03
41	GO:0003825: alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity	2.07E-03
42	GO:0004392: heme oxygenase (decyclizing) activity	2.78E-03
43	GO:0046556: alpha-L-arabinofuranosidase activity	2.78E-03
44	GO:0004659: prenyltransferase activity	2.78E-03
45	GO:0016846: carbon-sulfur lyase activity	3.56E-03
46	GO:0016773: phosphotransferase activity, alcohol group as acceptor	3.56E-03
47	GO:0047134: protein-disulfide reductase activity	3.80E-03
48	GO:0003968: RNA-directed 5'-3' RNA polymerase activity	4.41E-03
49	GO:0080030: methyl indole-3-acetate esterase activity	4.41E-03
50	GO:1990714: hydroxyproline O-galactosyltransferase activity	4.41E-03
51	GO:0004791: thioredoxin-disulfide reductase activity	4.76E-03
52	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	5.31E-03
53	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	5.31E-03
54	GO:0016788: hydrolase activity, acting on ester bonds	5.85E-03
55	GO:0004033: aldo-keto reductase (NADP) activity	7.30E-03
56	GO:0008173: RNA methyltransferase activity	8.38E-03
57	GO:0102483: scopolin beta-glucosidase activity	9.35E-03
58	GO:0008889: glycerophosphodiester phosphodiesterase activity	9.51E-03
59	GO:0015238: drug transmembrane transporter activity	1.09E-02
60	GO:0015020: glucuronosyltransferase activity	1.19E-02
61	GO:0030234: enzyme regulator activity	1.19E-02
62	GO:0008515: sucrose transmembrane transporter activity	1.32E-02
63	GO:0008559: xenobiotic-transporting ATPase activity	1.32E-02
64	GO:0044183: protein binding involved in protein folding	1.32E-02
65	GO:0008422: beta-glucosidase activity	1.44E-02
66	GO:0000149: SNARE binding	1.44E-02
67	GO:0000976: transcription regulatory region sequence-specific DNA binding	1.46E-02
68	GO:0000049: tRNA binding	1.46E-02
69	GO:0005215: transporter activity	1.54E-02
70	GO:0003725: double-stranded RNA binding	1.59E-02
71	GO:0004089: carbonate dehydratase activity	1.59E-02
72	GO:0031072: heat shock protein binding	1.59E-02
73	GO:0005484: SNAP receptor activity	1.70E-02
74	GO:0003774: motor activity	1.74E-02
75	GO:0035091: phosphatidylinositol binding	1.84E-02
76	GO:0008146: sulfotransferase activity	1.88E-02
77	GO:0051119: sugar transmembrane transporter activity	1.88E-02
78	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	2.04E-02
79	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	2.04E-02
80	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	2.04E-02
81	GO:0005528: FK506 binding	2.19E-02
82	GO:0016787: hydrolase activity	2.21E-02
83	GO:0005345: purine nucleobase transmembrane transporter activity	2.35E-02
84	GO:0016298: lipase activity	2.38E-02
85	GO:0004176: ATP-dependent peptidase activity	2.51E-02
86	GO:0033612: receptor serine/threonine kinase binding	2.51E-02
87	GO:0008810: cellulase activity	2.85E-02
88	GO:0003727: single-stranded RNA binding	3.03E-02
89	GO:0008514: organic anion transmembrane transporter activity	3.03E-02
90	GO:0004812: aminoacyl-tRNA ligase activity	3.21E-02
91	GO:0051082: unfolded protein binding	3.27E-02
92	GO:0015035: protein disulfide oxidoreductase activity	3.37E-02
93	GO:0052689: carboxylic ester hydrolase activity	3.42E-02
94	GO:0001085: RNA polymerase II transcription factor binding	3.58E-02
95	GO:0003713: transcription coactivator activity	3.58E-02
96	GO:0001135: transcription factor activity, RNA polymerase II transcription factor recruiting	3.78E-02
97	GO:0004871: signal transducer activity	4.00E-02
98	GO:0003824: catalytic activity	4.09E-02
99	GO:0000981: RNA polymerase II transcription factor activity, sequence-specific DNA binding	4.31E-02
100	GO:0004252: serine-type endopeptidase activity	4.53E-02
101	GO:0000156: phosphorelay response regulator activity	4.55E-02
102	GO:0016791: phosphatase activity	4.76E-02
103	GO:0016759: cellulose synthase activity	4.76E-02
104	GO:0008237: metallopeptidase activity	4.97E-02
105	GO:0005200: structural constituent of cytoskeleton	4.97E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	1.70E-09
2	GO:0009570: chloroplast stroma	1.12E-06
3	GO:0000427: plastid-encoded plastid RNA polymerase complex	8.83E-04
4	GO:0009295: nucleoid	9.51E-04
5	GO:0009534: chloroplast thylakoid	1.41E-03
6	GO:0009508: plastid chromosome	1.42E-03
7	GO:0009528: plastid inner membrane	1.43E-03
8	GO:0010007: magnesium chelatase complex	1.43E-03
9	GO:0031969: chloroplast membrane	1.96E-03
10	GO:0009544: chloroplast ATP synthase complex	2.78E-03
11	GO:0009527: plastid outer membrane	2.78E-03
12	GO:0012507: ER to Golgi transport vesicle membrane	7.30E-03
13	GO:0009501: amyloplast	7.30E-03
14	GO:0009543: chloroplast thylakoid lumen	8.80E-03
15	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	9.51E-03
16	GO:0005720: nuclear heterochromatin	9.51E-03
17	GO:0009535: chloroplast thylakoid membrane	9.77E-03
18	GO:0009707: chloroplast outer membrane	1.04E-02
19	GO:0016459: myosin complex	1.19E-02
20	GO:0031977: thylakoid lumen	1.57E-02
21	GO:0031201: SNARE complex	1.57E-02
22	GO:0005578: proteinaceous extracellular matrix	1.59E-02
23	GO:0009654: photosystem II oxygen evolving complex	2.35E-02
24	GO:0009941: chloroplast envelope	2.38E-02
25	GO:0009532: plastid stroma	2.51E-02
26	GO:0009706: chloroplast inner membrane	3.27E-02
27	GO:0019898: extrinsic component of membrane	3.96E-02
28	GO:0009536: plastid	4.89E-02
29	GO:0010319: stromule	4.97E-02