gene detail

Gene description

TAIR ID: AT4G28270

Short description: RING membrane-anchor 2

Pathogen responsiveness: -0.72

General responsiveness: 0.37

Orthologous

Rice: No orthologous gene

Maize: No orthologous gene

Wheat: No orthologous gene

GO biological process

ER-associated misfolded protein catabolic process, protein ubiquitination involved in ubiquitin-dependent protein catabolic process

GO cellular component

integral component of membrane, Derlin-1 retrotranslocation complex, endoplasmic reticulum, nucleus

GO molecular function

ubiquitin-protein transferase activity, ubiquitin protein ligase activity involved in ERAD pathway, metal ion binding, ubiquitin-like protein conjugating enzyme binding

Protein domain

Pfam	PF13445, RING-type zinc-finger
SMART	SM00184, RING

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

PATH:ath04141: Protein processing in endoplasmic reticulum

Transcriptional regulation

Regulator:
AT5G13790, AT1G24260

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 2

click to view PPI network

Coexpression network

GSE26679_WT_GC  view
GSE56094_WT_HRPA-  view
GSE13739_WT_GO  view
GSE13739_EDS16_GO  view
GSE5686_WT_GO  view
GSE45212_MED14_PSTDC3000_AVRRPT2  view
GSE26679_EDR1_GC  view

Differentially expressed condition

7 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE12856	Col, WT, control	Col, WT, Bg h	-1.80	1.01E-07
GSE13739	Col, WT, control 0 h	Col, WT, G.orontii 6 h	2.05	8.68E-13
GSE13739	Col, eds, control 0 h	Col, eds, G.orontii 6 h	2.05	8.86E-13
GSE45214	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 4 h	-1.74	5.79E-08
GSE45214	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 4 h	-2.10	4.11E-09
GSE45214	Col, npr1, PstDC3000 AvrRpt2 0 h	Col, npr1, PstDC3000 AvrRpt2 4 h	-1.67	1.40E-07
GSE56094	Col, WT, control 11 h	Col, WT, PstDC3000 11 h	-1.54	1.80E-07