Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G28270

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0000024: maltose biosynthetic process0.00E+00
2GO:0010423: negative regulation of brassinosteroid biosynthetic process0.00E+00
3GO:0018316: peptide cross-linking via L-cystine0.00E+00
4GO:0009264: deoxyribonucleotide catabolic process0.00E+00
5GO:0006971: hypotonic response0.00E+00
6GO:0006796: phosphate-containing compound metabolic process3.09E-06
7GO:1903507: negative regulation of nucleic acid-templated transcription2.52E-05
8GO:0031347: regulation of defense response2.96E-05
9GO:0050691: regulation of defense response to virus by host3.00E-05
10GO:0019605: butyrate metabolic process3.00E-05
11GO:0071454: cellular response to anoxia3.00E-05
12GO:0006083: acetate metabolic process3.00E-05
13GO:0071461: cellular response to redox state3.00E-05
14GO:0048438: floral whorl development3.00E-05
15GO:2000693: positive regulation of seed maturation7.58E-05
16GO:0010220: positive regulation of vernalization response7.58E-05
17GO:0080153: negative regulation of reductive pentose-phosphate cycle7.58E-05
18GO:2000022: regulation of jasmonic acid mediated signaling pathway8.26E-05
19GO:0071492: cellular response to UV-A1.32E-04
20GO:0040009: regulation of growth rate1.32E-04
21GO:0009963: positive regulation of flavonoid biosynthetic process1.97E-04
22GO:0034613: cellular protein localization2.67E-04
23GO:0071486: cellular response to high light intensity2.67E-04
24GO:0009765: photosynthesis, light harvesting2.67E-04
25GO:0006097: glyoxylate cycle3.42E-04
26GO:0010200: response to chitin3.44E-04
27GO:0009267: cellular response to starvation4.20E-04
28GO:0000060: protein import into nucleus, translocation4.20E-04
29GO:0010076: maintenance of floral meristem identity5.02E-04
30GO:0010077: maintenance of inflorescence meristem identity5.02E-04
31GO:0009926: auxin polar transport5.12E-04
32GO:0009751: response to salicylic acid5.32E-04
33GO:0009753: response to jasmonic acid5.92E-04
34GO:0030162: regulation of proteolysis6.76E-04
35GO:0009909: regulation of flower development7.52E-04
36GO:0009051: pentose-phosphate shunt, oxidative branch8.63E-04
37GO:0009611: response to wounding1.13E-03
38GO:0000272: polysaccharide catabolic process1.16E-03
39GO:0009845: seed germination1.27E-03
40GO:0016925: protein sumoylation1.27E-03
41GO:0005983: starch catabolic process1.27E-03
42GO:0010582: floral meristem determinacy1.27E-03
43GO:0010223: secondary shoot formation1.50E-03
44GO:0009934: regulation of meristem structural organization1.50E-03
45GO:0034605: cellular response to heat1.50E-03
46GO:0002237: response to molecule of bacterial origin1.50E-03
47GO:0019253: reductive pentose-phosphate cycle1.50E-03
48GO:0007623: circadian rhythm1.61E-03
49GO:0009739: response to gibberellin1.79E-03
50GO:0019915: lipid storage2.11E-03
51GO:0019722: calcium-mediated signaling2.52E-03
52GO:0070417: cellular response to cold2.66E-03
53GO:0016117: carotenoid biosynthetic process2.66E-03
54GO:0030154: cell differentiation2.96E-03
55GO:0009733: response to auxin3.08E-03
56GO:0048510: regulation of timing of transition from vegetative to reproductive phase3.40E-03
57GO:0002229: defense response to oomycetes3.40E-03
58GO:0010252: auxin homeostasis3.87E-03
59GO:0009409: response to cold3.90E-03
60GO:0007267: cell-cell signaling4.03E-03
61GO:0009911: positive regulation of flower development4.36E-03
62GO:0006629: lipid metabolic process4.47E-03
63GO:0042128: nitrate assimilation4.70E-03
64GO:0048573: photoperiodism, flowering4.88E-03
65GO:0010311: lateral root formation5.41E-03
66GO:0010119: regulation of stomatal movement5.78E-03
67GO:0042542: response to hydrogen peroxide7.14E-03
68GO:0009744: response to sucrose7.34E-03
69GO:0000165: MAPK cascade8.38E-03
70GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process8.38E-03
71GO:0045893: positive regulation of transcription, DNA-templated9.08E-03
72GO:0042545: cell wall modification1.13E-02
73GO:0009742: brassinosteroid mediated signaling pathway1.21E-02
74GO:0042742: defense response to bacterium1.61E-02
75GO:0006413: translational initiation1.62E-02
76GO:0045490: pectin catabolic process1.70E-02
77GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process1.85E-02
78GO:0045944: positive regulation of transcription from RNA polymerase II promoter2.20E-02
79GO:0006355: regulation of transcription, DNA-templated2.26E-02
80GO:0006952: defense response2.33E-02
81GO:0009723: response to ethylene2.58E-02
82GO:0006351: transcription, DNA-templated2.62E-02
83GO:0009734: auxin-activated signaling pathway4.56E-02
RankGO TermAdjusted P value
1GO:0016161: beta-amylase activity4.52E-06
2GO:0004427: inorganic diphosphatase activity6.30E-06
3GO:0047760: butyrate-CoA ligase activity3.00E-05
4GO:0003987: acetate-CoA ligase activity3.00E-05
5GO:0003714: transcription corepressor activity5.95E-05
6GO:0008253: 5'-nucleotidase activity1.32E-04
7GO:0017057: 6-phosphogluconolactonase activity1.97E-04
8GO:0046982: protein heterodimerization activity2.41E-04
9GO:0031386: protein tag3.42E-04
10GO:0016208: AMP binding4.20E-04
11GO:0016462: pyrophosphatase activity4.20E-04
12GO:0008429: phosphatidylethanolamine binding4.20E-04
13GO:0102229: amylopectin maltohydrolase activity4.20E-04
14GO:0009672: auxin:proton symporter activity9.61E-04
15GO:0004860: protein kinase inhibitor activity1.16E-03
16GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding1.33E-03
17GO:0010329: auxin efflux transmembrane transporter activity1.38E-03
18GO:0003712: transcription cofactor activity1.61E-03
19GO:0000287: magnesium ion binding2.42E-03
20GO:0004402: histone acetyltransferase activity2.80E-03
21GO:0001085: RNA polymerase II transcription factor binding2.94E-03
22GO:0016168: chlorophyll binding4.53E-03
23GO:0004806: triglyceride lipase activity4.88E-03
24GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding5.78E-03
25GO:0005515: protein binding6.36E-03
26GO:0031625: ubiquitin protein ligase binding9.70E-03
27GO:0045330: aspartyl esterase activity9.70E-03
28GO:0045735: nutrient reservoir activity1.02E-02
29GO:0030599: pectinesterase activity1.11E-02
30GO:0046910: pectinesterase inhibitor activity1.62E-02
31GO:0003743: translation initiation factor activity1.90E-02
32GO:0042802: identical protein binding2.02E-02
33GO:0043565: sequence-specific DNA binding2.10E-02
34GO:0003682: chromatin binding2.42E-02
35GO:0043531: ADP binding2.48E-02
36GO:0003700: transcription factor activity, sequence-specific DNA binding2.50E-02
37GO:0042803: protein homodimerization activity3.18E-02
38GO:0004871: signal transducer activity3.18E-02
RankGO TermAdjusted P value
1GO:0043234: protein complex1.73E-03
2GO:0009523: photosystem II3.24E-03
3GO:0071944: cell periphery3.71E-03
4GO:0005667: transcription factor complex4.70E-03
5GO:0019005: SCF ubiquitin ligase complex5.23E-03
6GO:0031966: mitochondrial membrane8.60E-03
7GO:0005777: peroxisome9.08E-03
8GO:0031225: anchored component of membrane1.24E-02
9GO:0009570: chloroplast stroma2.87E-02
Gene type



Gene DE type