gene detail

Gene description

TAIR ID: AT4G24670

Short description: tryptophan aminotransferase related 2

Pathogen responsiveness: 0.19

General responsiveness: -0.29

Orthologous

Rice:

OS01G0169800 OS01G0717700

Maize:

GRMZM2G066345

Wheat:

TAAFFX.111430.1.S1_AT

GO biological process

cotyledon vascular tissue pattern formation, gynoecium development, primary root development, positive gravitropism, shoot system development, indoleacetic acid biosynthetic process, auxin biosynthetic process, lateral root development, maintenance of root meristem identity, defense response to bacterium, flower development, cotyledon development, response to ethylene, embryo development ending in seed dormancy, cellular response to nitrogen levels, phloem or xylem histogenesis

GO cellular component

integral component of membrane, endoplasmic reticulum membrane

GO molecular function

L-tryptophan:2-oxoglutarate aminotransferase activity, carbon-sulfur lyase activity, L-tryptophan:pyruvate aminotransferase activity

Protein domain

Pfam	PF04864, Allinase

Metabolic pathway

PWY-581: indole-3-acetate biosynthesis II

KEGG pathway

PATH:ath00380: Tryptophan metabolism

Transcriptional regulation

Regulator:
AT5G13790, AT1G24260, AT5G61850

Target:
none

Protein-protein interaction network

No Interactor

Coexpression network

GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE26679_WT_GC  view
GSE13739_WT_GO  view
GSE13739_EDS16_GO  view
GSE5686_WT_GO  view
GSE45212_MED14_PSTDC3000_AVRRPT2  view

Differentially expressed condition

24 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE17500	Col, 35S:AFB1, control 0 h	Col, 35S:AFB1, PstDC3000 24 h	-2.68	3.27E-05
GSE17500	Col, WT, control 0 h	Col, WT, PstDC3000 24 h	-3.02	5.83E-06
GSE17500	Col, miR393, control 0 h	Col, miR393, PstDC3000 24 h	-2.83	1.74E-05
GSE18978	Col, WT, control 24 h	Col, WT, PsmES4326 24 h	-2.13	1.22E-10
GSE20278	Col, RPL18-HF, control	Col, RPL18-HF, TuMV 10 d	-1.67	5.73E-03
GSE26679	Col, WT, GC 0 h	Col, WT, GC 18 h	-2.04	2.16E-06
GSE26679	Col, WT, GC 0 h	Col, WT, GC 36 h	-2.72	1.92E-08
GSE26679	Col, edr1, GC 0 h	Col, edr1, GC 18 h	-2.18	7.18E-07
GSE26679	Col, edr1, GC 0 h	Col, edr1, GC 36 h	-3.10	1.18E-09
GSE37269	St0, WT, control	St0, WT, TEV 21 d	-1.64	2.86E-02
GSE40544	Col, WT, control	Col, WT, PstDC3000 AvrRpt2	-3.27	2.68E-06
GSE40544	Col, WT, control	Col, WT, PstDC3000 EV	-3.24	2.32E-06
GSE40544	Col, Sid2, control	Col, Sid2, PstDC3000 AvrRpt2	-3.06	5.37E-06
GSE40544	Col, Sid2, control	Col, Sid2, PstDC3000 EV	-1.81	2.08E-03
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 12 h	-2.23	1.62E-14
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 8 h	-1.92	1.83E-13
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 12 h	-2.18	2.30E-14
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 4 h	-1.53	3.74E-12
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 8 h	-2.16	2.21E-14
GSE45214	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 4 h	-1.51	1.10E-11
GSE45214	Col, med16, PstDC3000 AvrRpt2 0 h	Col, med16, PstDC3000 AvrRpt2 4 h	-2.30	7.90E-15
GSE50526	Col, WT, mock 24 h	Col, WT, A. brassicicola 24 h	-2.60	5.76E-06
GSE58954	Col, WT, Psm AvrRpt2 0 h	Col, WT, Psm AvrRpt2 6 h	-1.93	3.48E-03
GSE6556	Col, gh3.5, control	Col, gh3.5, PstDC3000 AvrRpt2 48 h	-2.02	6.55E-06