Gene: AT4G23820
     

Gene description


TAIR ID: AT4G23820

Short description: Pectin lyase-like superfamily protein

Pathogen responsiveness: 1.18

General responsiveness: 1.34

Orthologous


Rice:

OS02G0256100  

Maize:

GRMZM2G174598  

Wheat: No orthologous gene

GO biological process


cell wall organization, carbohydrate metabolic process


GO cellular component


extracellular region


GO molecular function


lyase activity, polygalacturonase activity


Protein domain


PfamPF00295, Glycosyl hydrolases family 28
SMARTSM00710, PbH1

KEGG pathway


Not involved in KEGG pathway


Transcriptional regulation


Regulator:
AT5G13790, AT1G73805, AT5G26920, AT1G24260, AT2G43010

Target:
none

Protein-protein interaction network


No Interactor


Differentially expressed condition


48 conditions



SeriesControlTreatmentLog2FCAdj. P value
GSE11807Col, erf104 ko, water 4 hCol, erf104 ko, Flg22 4 h-1.562.59E-02
GSE12856Col, WT, controlCol, WT, Bg h-1.742.61E-05
GSE12856Col, ataf1, controlCol, ataf1, Bg h-1.623.78E-05
GSE13739Col, WT, control 0 hCol, WT, G.orontii 5 d-1.543.20E-02
GSE13739Col, WT, control 0 hCol, WT, G.orontii 6 h-2.043.58E-03
GSE13739Col, eds, control 0 hCol, eds, G.orontii 6 h-1.504.02E-02
GSE17464Laer, controlLaer, Flg22 2 h-2.381.54E-04
GSE17464Penta, controlPenta, PstDC3000 12 h1.745.81E-03
GSE17500Col, 35S:AFB1, control 0 hCol, 35S:AFB1, PstDC3000 24 h-2.542.60E-04
GSE17500Col, WT, control 0 hCol, WT, PstDC3000 24 h-3.083.17E-05
GSE17500Col, miR393, control 0 hCol, miR393, PstDC3000 24 h-2.651.63E-04
GSE18978Col, WT, control 24 hCol, WT, PsmES4326 24 h-4.522.10E-13
GSE21920Col, WT, mockCol, WT, Pto HopZ1a 6 h-1.933.68E-05
GSE37269Ei2, WT, controlEi2, WT, TEV 21 d-2.458.41E-04
GSE40544Col, WT, controlCol, WT, PstDC3000 AvrRpt2-2.051.80E-03
GSE40544Col, WT, controlCol, WT, PstDC3000 EV-1.678.34E-03
GSE40544Col, Sid2, controlCol, Sid2, PstDC3000 AvrRpt2-2.022.12E-03
GSE45212Col, WT, PstDC3000 AvrRpt2 0 hCol, WT, PstDC3000 AvrRpt2 12 h-3.805.45E-12
GSE45212Col, WT, PstDC3000 AvrRpt2 0 hCol, WT, PstDC3000 AvrRpt2 8 h-2.434.54E-09
GSE45212Col, med14, PstDC3000 AvrRpt2 0 hCol, med14, PstDC3000 AvrRpt2 12 h-3.699.20E-12
GSE45212Col, med14, PstDC3000 AvrRpt2 0 hCol, med14, PstDC3000 AvrRpt2 4 h-3.031.84E-10
GSE45212Col, med14, PstDC3000 AvrRpt2 0 hCol, med14, PstDC3000 AvrRpt2 8 h-5.059.28E-14
GSE45214Col, med16, PstDC3000 AvrRpt2 0 hCol, med16, PstDC3000 AvrRpt2 4 h-2.053.25E-11
GSE50526Col, WT, mock 24 hCol, WT, A. brassicicola 24 h-2.819.56E-05
GSE52979Col, WT, acetoneCol, WT, acetone flg22_2 h-3.526.94E-03
GSE5520Col, WT, control 10 hCol, WT, Cor- 10 h-3.245.18E-05
GSE5520Col, WT, control 24 hCol, WT, PstDC3000 24 h-2.631.34E-03
GSE56094Col, WT, control 10 hCol, WT, PstDC3000 10 h-2.664.32E-08
GSE56094Col, WT, control 10 hCol, WT, hrpA- 10 h-2.094.26E-05
GSE56094Col, WT, control 11 hCol, WT, PstDC3000 11 h-2.647.89E-08
GSE56094Col, WT, control 11 hCol, WT, hrpA- 11 h-2.161.88E-05
GSE56094Col, WT, control 12 hCol, WT, PstDC3000 12 h-3.078.13E-10
GSE56094Col, WT, control 12 hCol, WT, hrpA- 12 h-1.952.50E-04
GSE56094Col, WT, control 13 hCol, WT, PstDC3000 13 h-2.147.84E-06
GSE56094Col, WT, control 4 hCol, WT, PstDC3000 4 h-2.031.12E-04
GSE56094Col, WT, control 7 hCol, WT, PstDC3000 7 h-1.824.24E-04
GSE56094Col, WT, control 8 hCol, WT, PstDC3000 8 h-1.841.86E-04
GSE56094Col, WT, control 8 hCol, WT, hrpA- 8 h-2.093.82E-05
GSE56094Col, WT, control 9 hCol, WT, PstDC3000 9 h-2.082.48E-05
GSE56094Col, WT, control 9 hCol, WT, hrpA- 9 h-1.833.85E-04
GSE5615Col, WT, GST 4 hCol, WT, GST+NPP1 4 h-1.931.72E-04
GSE5616Col, WT, water 24 hCol, WT, P. infestans 24 h-1.502.65E-04
GSE58954Col, WT, Psm AvrRpt2 0 hCol, WT, Psm AvrRpt2 6 h-3.276.59E-04
GSE6176Col, WT, control 12 hCol, WT, PstDC3000 12 h-1.682.33E-04
GSE6556Col, gh3.5, controlCol, gh3.5, PstDC3000 AvrRpt2 48 h-1.914.70E-05
GSE9674Ws-4, AtMYB30 ox, controlWs-4, AtMYB30 ox, Xanthomonas strain Xcc147 2-4 h-1.579.38E-03
GSE9674Ws-4, AtMYB30 ox, controlWs-4, AtMYB30 ox, Xanthomonas strain Xcc147 6 h-2.668.39E-04
GSE9674Ws-4, AtMYB30 ox, controlWs-4, AtMYB30 ox, Xanthomonas strain Xcc147 90-105 min-1.561.80E-02






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