gene detail

Gene description

TAIR ID: AT4G21560

Short description: vacuolar protein sorting-associated protein 28 homolog 1

Pathogen responsiveness: -1.34

General responsiveness: -2.28

Orthologous

Rice:

OS01G0781000

Maize:

GRMZM2G135054

Wheat: No orthologous gene

GO biological process

protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway, transport

GO cellular component

trans-Golgi network, ESCRT I complex, nucleus, Golgi apparatus

GO molecular function

transporter activity, protein complex binding, protein binding

Protein domain

Pfam	PF03997, VPS28 protein

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

PATH:ath04144: Endocytosis

Transcriptional regulation

Regulator:
AT1G24260

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 7

click to view PPI network

Coexpression network

GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE26679_WT_GC  view
GSE13739_WT_GO  view
GSE13739_EDS16_GO  view
GSE56094_WT_PSTDC3000  view
GSE45212_MED14_PSTDC3000_AVRRPT2  view
GSE26679_EDR1_GC  view

Differentially expressed condition

3 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE26679	Col, edr1, GC 0 h	Col, edr1, GC 18 h	1.57	6.75E-08
GSE26679	Col, edr1, GC 0 h	Col, edr1, GC 36 h	1.91	1.24E-09
GSE56094	Col, WT, control 10 h	Col, WT, PstDC3000 10 h	1.74	1.22E-16