Gene: AT4G19020
     

Gene description


TAIR ID: AT4G19020

Short description: chromomethylase 2

Pathogen responsiveness: -1.55

General responsiveness: -3.38

Orthologous


Rice: No orthologous gene
Maize:

GRMZM2G025592  

Wheat:

TAAFFX.95180.1.S1_AT  


GO biological process


transcription, DNA-templated, DNA methylation on cytosine within a CHH sequence, C-5 methylation of cytosine, cellular response to heat, DNA methylation, regulation of transcription, covalent chromatin modification


GO cellular component


nucleus


GO molecular function


DNA (cytosine-5-)-methyltransferase activity, DNA binding, chromatin binding


Protein domain


PfamPF00385, Chromo (CHRromatin Organisation MOdifier) domain
PfamPF01426, BAH domain
PfamPF00145, C-5 cytosine-specific DNA methylase
SMARTSM00439, BAH
SMARTSM00298, CHROMO

Metabolic pathway


Not involved in metabolic pathway


Transcriptional regulation


Regulator:
AT1G24260, AT5G61850

Target:
none

Protein-protein interaction network


The number of partners (degree) is: 3

click to view PPI network

Differentially expressed condition


4 conditions



SeriesControlTreatmentLog2FCAdj. P value
GSE37269Ei2, WT, controlEi2, WT, TEV 21 d-1.906.57E-03
GSE40544Col, WT, controlCol, WT, PstDC3000 AvrRpt2-1.701.88E-02
GSE40544Col, Sid2, controlCol, Sid2, PstDC3000 AvrRpt2-1.503.75E-02
GSE45212Col, WT, PstDC3000 AvrRpt2 0 hCol, WT, PstDC3000 AvrRpt2 12 h-1.951.68E-12






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