gene detail

Gene description

TAIR ID: AT4G18520

Short description: Pentatricopeptide repeat (PPR) superfamily protein

Pathogen responsiveness: -1.34

General responsiveness: -0.53

Orthologous

Rice: No orthologous gene

Maize:

GRMZM2G333641

Wheat: No orthologous gene

GO biological process

chloroplast RNA modification, RNA splicing, mRNA processing

GO cellular component

mitochondrion, chloroplast

GO molecular function

RNA binding, endonuclease activity, protein binding

Protein domain

Pfam	PF13041, PPR repeat family
Pfam	PF01535, PPR repeat

Metabolic pathway

PWY-3781: aerobic respiration (cytochrome c)

KEGG pathway

Not involved in KEGG pathway

Transcriptional regulation

No regulation information

Protein-protein interaction network

The number of partners (degree) is: 3

click to view PPI network

Coexpression network

GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE13739_WT_GO  view
GSE13739_EDS16_GO  view
GSE45212_MED14_PSTDC3000_AVRRPT2  view

Differentially expressed condition

6 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE17464	Laer, control	Laer, Alternaria brassicicola 3 d	2.29	1.05E-10
GSE17464	Penta, control	Penta, Alternaria brassicicola 3 d	2.00	6.10E-09
GSE37269	St0, WT, control	St0, WT, TEV 21 d	-1.76	3.38E-03
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 12 h	-1.87	3.05E-13
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 8 h	-1.54	4.19E-12
GSE5520	Col, WT, control 10 h	Col, WT, Cor- 10 h	-1.56	9.99E-04