Gene: AT4G17880
     

Gene description


TAIR ID: AT4G17880

Short description: Basic helix-loop-helix (bHLH) DNA-binding family protein

Pathogen responsiveness: -0.46

General responsiveness: -1.04

Orthologous


Rice: No orthologous gene
Maize: No orthologous gene
Wheat: No orthologous gene

GO biological process


positive regulation of transcription, DNA-templated, regulation of transcription, defense response, transcription


GO cellular component


nucleus


GO molecular function


transcription factor activity, sequence-specific DNA binding, protein binding, anthocyanin-containing compound biosynthetic process


Protein domain


PfamPF14215, bHLH-MYC and R2R3-MYB transcription factors N-terminal
PfamPF00010, Helix-loop-helix DNA-binding domain
SMARTSM00353, HLH

Metabolic pathway


Not involved in metabolic pathway


KEGG pathway


Not involved in KEGG pathway


Transcriptional regulation


Regulator:
AT5G56110, AT4G16110, AT1G24260

Target:
none

Protein-protein interaction network


The number of partners (degree) is: 27 (Top10%)

click to view PPI network

Differentially expressed condition


13 conditions



SeriesControlTreatmentLog2FCAdj. P value
GSE18978Col, WT, control 24 hCol, WT, PsmES4326 24 h-1.801.62E-05
GSE26679Col, edr1, GC 0 hCol, edr1, GC 96 h1.854.23E-08
GSE37269Ei2, WT, controlEi2, WT, TEV 21 d-1.632.13E-02
GSE37269St0, WT, controlSt0, WT, TEV 21 d-1.817.47E-03
GSE45212Col, med14, PstDC3000 AvrRpt2 0 hCol, med14, PstDC3000 AvrRpt2 4 h-1.522.80E-11
GSE45214Col, WT, PstDC3000 AvrRpt2 0 hCol, WT, PstDC3000 AvrRpt2 4 h-1.941.26E-13
GSE52979Col, WT, acetoneCol, WT, acetone flg22_2 h-2.211.44E-05
GSE52979Col, WT, oxo_C14_HSLCol, WT, oxo_C14_HSL flg22_2 h-2.231.13E-05
GSE56094Col, WT, control 10 hCol, WT, PstDC3000 10 h-1.565.69E-09
GSE56094Col, WT, control 11 hCol, WT, PstDC3000 11 h-1.742.85E-10
GSE56094Col, WT, control 13 hCol, WT, PstDC3000 13 h-1.751.49E-10
GSE5616Col, WT, water 6 hCol, WT, P. infestans 6 h-1.766.14E-07
GSE58954Col, WT, Psm AvrRpt2 0 hCol, WT, Psm AvrRpt2 6 h-2.701.58E-03






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