co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G17880

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0046294: formaldehyde catabolic process	0.00E+00
2	GO:0016093: polyprenol metabolic process	0.00E+00
3	GO:0017012: protein-phytochromobilin linkage	0.00E+00
4	GO:0019379: sulfate assimilation, phosphoadenylyl sulfate reduction by phosphoadenylyl-sulfate reductase (thioredoxin)	0.00E+00
5	GO:0018293: protein-FAD linkage	0.00E+00
6	GO:0034553: mitochondrial respiratory chain complex II assembly	0.00E+00
7	GO:0032780: negative regulation of ATPase activity	0.00E+00
8	GO:0010202: response to low fluence red light stimulus	0.00E+00
9	GO:0009902: chloroplast relocation	1.97E-05
10	GO:0006120: mitochondrial electron transport, NADH to ubiquinone	6.70E-05
11	GO:0009903: chloroplast avoidance movement	6.70E-05
12	GO:0055114: oxidation-reduction process	1.03E-04
13	GO:0006007: glucose catabolic process	1.58E-04
14	GO:0048438: floral whorl development	1.58E-04
15	GO:0080065: 4-alpha-methyl-delta7-sterol oxidation	1.58E-04
16	GO:0006567: threonine catabolic process	1.58E-04
17	GO:1902265: abscisic acid homeostasis	1.58E-04
18	GO:0000103: sulfate assimilation	2.50E-04
19	GO:0010617: circadian regulation of calcium ion oscillation	3.60E-04
20	GO:0007154: cell communication	3.60E-04
21	GO:0010220: positive regulation of vernalization response	3.60E-04
22	GO:0019441: tryptophan catabolic process to kynurenine	3.60E-04
23	GO:0080183: response to photooxidative stress	3.60E-04
24	GO:0043100: pyrimidine nucleobase salvage	3.60E-04
25	GO:0006099: tricarboxylic acid cycle	3.95E-04
26	GO:1901562: response to paraquat	5.89E-04
27	GO:0071492: cellular response to UV-A	5.89E-04
28	GO:0044375: regulation of peroxisome size	5.89E-04
29	GO:0031022: nuclear migration along microfilament	5.89E-04
30	GO:0019419: sulfate reduction	5.89E-04
31	GO:0051603: proteolysis involved in cellular protein catabolic process	7.85E-04
32	GO:0010148: transpiration	8.43E-04
33	GO:0009584: detection of visible light	8.43E-04
34	GO:0009649: entrainment of circadian clock	1.12E-03
35	GO:0006749: glutathione metabolic process	1.12E-03
36	GO:0034613: cellular protein localization	1.12E-03
37	GO:0006646: phosphatidylethanolamine biosynthetic process	1.12E-03
38	GO:0009687: abscisic acid metabolic process	1.12E-03
39	GO:0070534: protein K63-linked ubiquitination	1.12E-03
40	GO:0006545: glycine biosynthetic process	1.12E-03
41	GO:0071486: cellular response to high light intensity	1.12E-03
42	GO:0009765: photosynthesis, light harvesting	1.12E-03
43	GO:0006520: cellular amino acid metabolic process	1.15E-03
44	GO:0016120: carotene biosynthetic process	1.41E-03
45	GO:0009904: chloroplast accumulation movement	1.41E-03
46	GO:0010236: plastoquinone biosynthetic process	1.41E-03
47	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	1.41E-03
48	GO:0000060: protein import into nucleus, translocation	1.74E-03
49	GO:0006796: phosphate-containing compound metabolic process	1.74E-03
50	GO:0009117: nucleotide metabolic process	1.74E-03
51	GO:0006121: mitochondrial electron transport, succinate to ubiquinone	1.74E-03
52	GO:0006301: postreplication repair	1.74E-03
53	GO:0010304: PSII associated light-harvesting complex II catabolic process	1.74E-03
54	GO:0006555: methionine metabolic process	1.74E-03
55	GO:0070814: hydrogen sulfide biosynthetic process	1.74E-03
56	GO:0010076: maintenance of floral meristem identity	2.09E-03
57	GO:0017148: negative regulation of translation	2.09E-03
58	GO:0010019: chloroplast-nucleus signaling pathway	2.09E-03
59	GO:0010077: maintenance of inflorescence meristem identity	2.09E-03
60	GO:0019509: L-methionine salvage from methylthioadenosine	2.09E-03
61	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	2.09E-03
62	GO:0010029: regulation of seed germination	2.14E-03
63	GO:0006508: proteolysis	2.44E-03
64	GO:0050790: regulation of catalytic activity	2.45E-03
65	GO:0010374: stomatal complex development	2.45E-03
66	GO:0010161: red light signaling pathway	2.45E-03
67	GO:0030091: protein repair	2.84E-03
68	GO:0016559: peroxisome fission	2.84E-03
69	GO:0009787: regulation of abscisic acid-activated signaling pathway	2.84E-03
70	GO:0009407: toxin catabolic process	2.90E-03
71	GO:0015996: chlorophyll catabolic process	3.25E-03
72	GO:0009637: response to blue light	3.33E-03
73	GO:0046916: cellular transition metal ion homeostasis	3.67E-03
74	GO:0009638: phototropism	4.12E-03
75	GO:0006325: chromatin organization	4.58E-03
76	GO:0045036: protein targeting to chloroplast	4.58E-03
77	GO:0009970: cellular response to sulfate starvation	4.58E-03
78	GO:0009636: response to toxic substance	4.82E-03
79	GO:0043085: positive regulation of catalytic activity	5.05E-03
80	GO:0018119: peptidyl-cysteine S-nitrosylation	5.05E-03
81	GO:0010582: floral meristem determinacy	5.55E-03
82	GO:0030048: actin filament-based movement	6.06E-03
83	GO:0006108: malate metabolic process	6.06E-03
84	GO:2000028: regulation of photoperiodism, flowering	6.06E-03
85	GO:0050826: response to freezing	6.06E-03
86	GO:0009266: response to temperature stimulus	6.59E-03
87	GO:0005975: carbohydrate metabolic process	6.74E-03
88	GO:0019853: L-ascorbic acid biosynthetic process	7.13E-03
89	GO:0009225: nucleotide-sugar metabolic process	7.13E-03
90	GO:0007031: peroxisome organization	7.13E-03
91	GO:0051017: actin filament bundle assembly	8.27E-03
92	GO:0006487: protein N-linked glycosylation	8.27E-03
93	GO:0019344: cysteine biosynthetic process	8.27E-03
94	GO:0008299: isoprenoid biosynthetic process	8.86E-03
95	GO:0019915: lipid storage	9.46E-03
96	GO:0006012: galactose metabolic process	1.07E-02
97	GO:0009693: ethylene biosynthetic process	1.07E-02
98	GO:0016117: carotenoid biosynthetic process	1.20E-02
99	GO:0042391: regulation of membrane potential	1.27E-02
100	GO:0080022: primary root development	1.27E-02
101	GO:0010118: stomatal movement	1.27E-02
102	GO:0008654: phospholipid biosynthetic process	1.48E-02
103	GO:0009630: gravitropism	1.63E-02
104	GO:1901657: glycosyl compound metabolic process	1.71E-02
105	GO:0006464: cellular protein modification process	1.78E-02
106	GO:0009409: response to cold	1.93E-02
107	GO:0016126: sterol biosynthetic process	2.02E-02
108	GO:0010411: xyloglucan metabolic process	2.27E-02
109	GO:0015995: chlorophyll biosynthetic process	2.27E-02
110	GO:0016311: dephosphorylation	2.36E-02
111	GO:0046686: response to cadmium ion	2.37E-02
112	GO:0018298: protein-chromophore linkage	2.44E-02
113	GO:0010218: response to far red light	2.62E-02
114	GO:0010043: response to zinc ion	2.71E-02
115	GO:0007568: aging	2.71E-02
116	GO:0080167: response to karrikin	2.74E-02
117	GO:0009867: jasmonic acid mediated signaling pathway	2.89E-02
118	GO:0009853: photorespiration	2.89E-02
119	GO:0046777: protein autophosphorylation	2.93E-02
120	GO:0015979: photosynthesis	3.13E-02
121	GO:0030001: metal ion transport	3.17E-02
122	GO:0045454: cell redox homeostasis	3.28E-02
123	GO:0009640: photomorphogenesis	3.46E-02
124	GO:0000165: MAPK cascade	3.96E-02
125	GO:0031347: regulation of defense response	3.96E-02
126	GO:0006629: lipid metabolic process	4.03E-02
127	GO:0006486: protein glycosylation	4.28E-02
128	GO:0009585: red, far-red light phototransduction	4.28E-02
129	GO:0008152: metabolic process	4.44E-02
130	GO:0006096: glycolytic process	4.82E-02

Rank	GO Term	Adjusted P value
1	GO:0015205: nucleobase transmembrane transporter activity	0.00E+00
2	GO:0031517: red light photoreceptor activity	0.00E+00
3	GO:0047504: (-)-menthol dehydrogenase activity	0.00E+00
4	GO:0102996: beta,beta digalactosyldiacylglycerol galactosyltransferase activity	0.00E+00
5	GO:0018738: S-formylglutathione hydrolase activity	0.00E+00
6	GO:0047501: (+)-neomenthol dehydrogenase activity	0.00E+00
7	GO:0042030: ATPase inhibitor activity	0.00E+00
8	GO:0045436: lycopene beta cyclase activity	0.00E+00
9	GO:0047918: GDP-mannose 3,5-epimerase activity	0.00E+00
10	GO:0008106: alcohol dehydrogenase (NADP+) activity	1.06E-05
11	GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity	1.06E-05
12	GO:0010313: phytochrome binding	1.58E-04
13	GO:1990841: promoter-specific chromatin binding	1.58E-04
14	GO:0004793: threonine aldolase activity	1.58E-04
15	GO:0016783: sulfurtransferase activity	1.58E-04
16	GO:0004307: ethanolaminephosphotransferase activity	1.58E-04
17	GO:0008732: L-allo-threonine aldolase activity	1.58E-04
18	GO:0031516: far-red light photoreceptor activity	1.58E-04
19	GO:0045153: electron transporter, transferring electrons within CoQH2-cytochrome c reductase complex activity	1.58E-04
20	GO:0008793: aromatic-amino-acid:2-oxoglutarate aminotransferase activity	1.58E-04
21	GO:0016784: 3-mercaptopyruvate sulfurtransferase activity	1.58E-04
22	GO:0046480: galactolipid galactosyltransferase activity	1.58E-04
23	GO:0046906: tetrapyrrole binding	1.58E-04
24	GO:0080079: cellobiose glucosidase activity	1.58E-04
25	GO:0004719: protein-L-isoaspartate (D-aspartate) O-methyltransferase activity	1.58E-04
26	GO:0016780: phosphotransferase activity, for other substituted phosphate groups	1.58E-04
27	GO:0030572: phosphatidyltransferase activity	3.60E-04
28	GO:0004046: aminoacylase activity	3.60E-04
29	GO:0004142: diacylglycerol cholinephosphotransferase activity	3.60E-04
30	GO:0009973: adenylyl-sulfate reductase activity	3.60E-04
31	GO:0008967: phosphoglycolate phosphatase activity	3.60E-04
32	GO:0004604: phosphoadenylyl-sulfate reductase (thioredoxin) activity	3.60E-04
33	GO:0004061: arylformamidase activity	3.60E-04
34	GO:0009883: red or far-red light photoreceptor activity	3.60E-04
35	GO:0033741: adenylyl-sulfate reductase (glutathione) activity	3.60E-04
36	GO:0046537: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity	3.60E-04
37	GO:0050347: trans-octaprenyltranstransferase activity	3.60E-04
38	GO:0052924: all-trans-nonaprenyl-diphosphate synthase (geranylgeranyl-diphosphate specific) activity	3.60E-04
39	GO:0004185: serine-type carboxypeptidase activity	5.17E-04
40	GO:0004848: ureidoglycolate hydrolase activity	5.89E-04
41	GO:0004557: alpha-galactosidase activity	5.89E-04
42	GO:0008020: G-protein coupled photoreceptor activity	5.89E-04
43	GO:0004781: sulfate adenylyltransferase (ATP) activity	5.89E-04
44	GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity	5.89E-04
45	GO:0010277: chlorophyllide a oxygenase [overall] activity	5.89E-04
46	GO:0035529: NADH pyrophosphatase activity	8.43E-04
47	GO:0004792: thiosulfate sulfurtransferase activity	8.43E-04
48	GO:0000254: C-4 methylsterol oxidase activity	8.43E-04
49	GO:0048027: mRNA 5'-UTR binding	8.43E-04
50	GO:0008177: succinate dehydrogenase (ubiquinone) activity	1.41E-03
51	GO:0004069: L-aspartate:2-oxoglutarate aminotransferase activity	1.74E-03
52	GO:0003860: 3-hydroxyisobutyryl-CoA hydrolase activity	1.74E-03
53	GO:0030060: L-malate dehydrogenase activity	2.09E-03
54	GO:0005261: cation channel activity	2.09E-03
55	GO:0019899: enzyme binding	2.45E-03
56	GO:0004427: inorganic diphosphatase activity	2.45E-03
57	GO:0008236: serine-type peptidase activity	2.51E-03
58	GO:0016847: 1-aminocyclopropane-1-carboxylate synthase activity	2.84E-03
59	GO:0004034: aldose 1-epimerase activity	2.84E-03
60	GO:0046914: transition metal ion binding	3.25E-03
61	GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors	3.67E-03
62	GO:0004364: glutathione transferase activity	4.12E-03
63	GO:0004673: protein histidine kinase activity	4.58E-03
64	GO:0016491: oxidoreductase activity	5.26E-03
65	GO:0008378: galactosyltransferase activity	5.55E-03
66	GO:0031072: heat shock protein binding	6.06E-03
67	GO:0000155: phosphorelay sensor kinase activity	6.06E-03
68	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	6.59E-03
69	GO:0030552: cAMP binding	7.13E-03
70	GO:0030553: cGMP binding	7.13E-03
71	GO:0005216: ion channel activity	8.86E-03
72	GO:0004176: ATP-dependent peptidase activity	9.46E-03
73	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	1.06E-02
74	GO:0005249: voltage-gated potassium channel activity	1.27E-02
75	GO:0030551: cyclic nucleotide binding	1.27E-02
76	GO:0016853: isomerase activity	1.41E-02
77	GO:0048038: quinone binding	1.56E-02
78	GO:0008137: NADH dehydrogenase (ubiquinone) activity	1.56E-02
79	GO:0004518: nuclease activity	1.63E-02
80	GO:0004197: cysteine-type endopeptidase activity	1.63E-02
81	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.71E-02
82	GO:0016791: phosphatase activity	1.78E-02
83	GO:0042802: identical protein binding	1.81E-02
84	GO:0008237: metallopeptidase activity	1.86E-02
85	GO:0008483: transaminase activity	1.86E-02
86	GO:0016413: O-acetyltransferase activity	1.94E-02
87	GO:0016168: chlorophyll binding	2.10E-02
88	GO:0016788: hydrolase activity, acting on ester bonds	2.25E-02
89	GO:0030247: polysaccharide binding	2.27E-02
90	GO:0020037: heme binding	2.42E-02
91	GO:0004222: metalloendopeptidase activity	2.62E-02
92	GO:0030145: manganese ion binding	2.71E-02
93	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	2.89E-02
94	GO:0052689: carboxylic ester hydrolase activity	3.03E-02
95	GO:0008422: beta-glucosidase activity	3.08E-02
96	GO:0042803: protein homodimerization activity	3.43E-02
97	GO:0051537: 2 iron, 2 sulfur cluster binding	3.66E-02
98	GO:0051287: NAD binding	3.96E-02
99	GO:0005506: iron ion binding	4.23E-02
100	GO:0016298: lipase activity	4.38E-02
101	GO:0031625: ubiquitin protein ligase binding	4.60E-02
102	GO:0008234: cysteine-type peptidase activity	4.60E-02
103	GO:0003824: catalytic activity	4.83E-02

Rank	GO Term	Adjusted P value
1	GO:0005747: mitochondrial respiratory chain complex I	1.11E-04
2	GO:0005829: cytosol	1.40E-04
3	GO:0005773: vacuole	3.11E-04
4	GO:0009507: chloroplast	3.30E-04
5	GO:0005764: lysosome	4.31E-04
6	GO:0009526: plastid envelope	1.12E-03
7	GO:0031372: UBC13-MMS2 complex	1.12E-03
8	GO:0005746: mitochondrial respiratory chain	1.41E-03
9	GO:0031359: integral component of chloroplast outer membrane	2.45E-03
10	GO:0045273: respiratory chain complex II	2.84E-03
11	GO:0005749: mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)	2.84E-03
12	GO:0005779: integral component of peroxisomal membrane	3.25E-03
13	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	3.67E-03
14	GO:0016604: nuclear body	4.12E-03
15	GO:0005884: actin filament	5.05E-03
16	GO:0031969: chloroplast membrane	5.28E-03
17	GO:0005750: mitochondrial respiratory chain complex III	6.59E-03
18	GO:0016607: nuclear speck	7.04E-03
19	GO:0005758: mitochondrial intermembrane space	8.27E-03
20	GO:0045271: respiratory chain complex I	8.86E-03
21	GO:0005623: cell	1.06E-02
22	GO:0005739: mitochondrion	1.22E-02
23	GO:0005759: mitochondrial matrix	1.30E-02
24	GO:0009535: chloroplast thylakoid membrane	1.32E-02
25	GO:0005783: endoplasmic reticulum	1.43E-02
26	GO:0009523: photosystem II	1.48E-02
27	GO:0009505: plant-type cell wall	1.72E-02
28	GO:0005778: peroxisomal membrane	1.86E-02
29	GO:0009707: chloroplast outer membrane	2.44E-02
30	GO:0031966: mitochondrial membrane	4.07E-02