gene detail

Gene description

TAIR ID: AT4G17190

Short description: farnesyl diphosphate synthase 2

Pathogen responsiveness: -1.74

General responsiveness: -1.11

Orthologous

Rice: No orthologous gene

Maize: No orthologous gene

Wheat: No orthologous gene

GO biological process

isoprenoid biosynthetic process, farnesyl diphosphate biosynthetic process, geranyl diphosphate biosynthetic process, cholesterol biosynthetic process

GO cellular component

cytoplasm, cytosol

GO molecular function

geranyltranstransferase activity, dimethylallyltranstransferase activity, metal ion binding, transferase activity

Protein domain

Pfam	PF00348, Polyprenyl synthetase

Metabolic pathway

PWY-5123: trans, trans-farnesyl diphosphate biosynthesis
PWYQT-4449: polyisoprenoid biosynthesis
PWY-5910: superpathway of geranylgeranyldiphosphate biosynthesis I (via mevalonate)
PWY-5121: superpathway of geranylgeranyl diphosphate biosynthesis II (via MEP)
PWY-5122: geranyl diphosphate biosynthesis

KEGG pathway

PATH:ath00900: Terpenoid backbone biosynthesis

Transcriptional regulation

Regulator:
AT5G56110

Target:
none

Protein-protein interaction network

No Interactor

Coexpression network

GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE26679_WT_GC  view
GSE13739_WT_GO  view
GSE13739_EDS16_GO  view
GSE5686_WT_GO  view
GSE45212_MED14_PSTDC3000_AVRRPT2  view
GSE26679_EDR1_GC  view

Differentially expressed condition

3 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE17500	Col, miR393, control 0 h	Col, miR393, PstDC3000 24 h	-1.53	1.59E-06
GSE18978	Col, WT, control 24 h	Col, WT, PsmES4326 24 h	-1.84	1.37E-07
GSE5520	Col, WT, control 10 h	Col, WT, Cor- 10 h	-2.06	1.23E-05