Gene: AT4G08920
     


Gene description


TAIR ID: AT4G08920

Short description: cryptochrome 1

Pathogen responsiveness: -0.85

General responsiveness: 0.45

Orthologous


Rice: No orthologous gene
Maize:

GRMZM2G024739  

Wheat: No orthologous gene

GO biological process


photoprotection, response to strigolactone, response to blue light, stomatal movement, response to far red light, regulation of hydrogen peroxide metabolic process, singlet oxygen-mediated programmed cell death, anthocyanin-containing compound metabolic process, plant organ development, response to light stimulus, response to high light intensity, response to magnetism, regulation of leaf morphogenesis, detection of light stimulus, protein autophosphorylation, response to low fluence blue light stimulus by blue low-fluence system, circadian regulation of calcium ion oscillation, flavin adenine dinucleotide metabolic process, positive regulation of systemic acquired resistance, circadian rhythm, protein-chromophore linkage, photomorphogenesis, positive regulation of anion channel activity, regulation of meristem growth, phototropism, response to water deprivation, regulation of circadian rhythm, positive regulation of shade avoidance, positive regulation of defense response to bacterium, regulation of unidimensional cell growth, negative regulation of lateral root development, regulation of reactive oxygen species metabolic process, oxidation-reduction process, blue light signaling pathway, auxin transport, defense response, response to red light, response to absence of light


GO cellular component


PML body, nucleus, cytoplasm, nuclear body


GO molecular function


protein kinase activity, FAD binding, identical protein binding, protein binding, kinase activity, ATP binding, protein homodimerization activity, blue light photoreceptor activity, metal ion binding


Protein domain


PfamPF12546, Blue/Ultraviolet sensing protein C terminal
PfamPF00875, DNA photolyase
PfamPF03441, FAD binding domain of DNA photolyase

Metabolic pathway


Not involved in metabolic pathway


Transcriptional regulation


Regulator:
AT5G13790, AT2G38250, AT4G36990

Target:
none

Protein-protein interaction network


The number of partners (degree) is: 7

click to view PPI network

Differentially expressed condition


9 conditions



SeriesControlTreatmentLog2FCAdj. P value
GSE17464Penta, controlPenta, Flg22 2 h-1.701.38E-05
GSE45212Col, WT, PstDC3000 AvrRpt2 0 hCol, WT, PstDC3000 AvrRpt2 12 h-2.157.14E-14
GSE45212Col, WT, PstDC3000 AvrRpt2 0 hCol, WT, PstDC3000 AvrRpt2 8 h-2.333.96E-14
GSE45212Col, med14, PstDC3000 AvrRpt2 0 hCol, med14, PstDC3000 AvrRpt2 12 h-1.914.10E-13
GSE45212Col, med14, PstDC3000 AvrRpt2 0 hCol, med14, PstDC3000 AvrRpt2 4 h-1.905.63E-13
GSE45212Col, med14, PstDC3000 AvrRpt2 0 hCol, med14, PstDC3000 AvrRpt2 8 h-2.401.61E-14
GSE45214Col, med16, PstDC3000 AvrRpt2 0 hCol, med16, PstDC3000 AvrRpt2 4 h-1.813.53E-09
GSE5520Col, WT, control 7 hCol, WT, PstDC3000 7 h-1.803.76E-06
GSE58954Col, WT, Psm AvrRpt2 0 hCol, WT, Psm AvrRpt2 6 h-2.141.76E-03






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