co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G08920

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0033317: pantothenate biosynthetic process from valine	0.00E+00
2	GO:0019685: photosynthesis, dark reaction	0.00E+00
3	GO:0090470: shoot organ boundary specification	0.00E+00
4	GO:0045747: positive regulation of Notch signaling pathway	0.00E+00
5	GO:0046460: neutral lipid biosynthetic process	0.00E+00
6	GO:0019279: L-methionine biosynthetic process from L-homoserine via cystathionine	0.00E+00
7	GO:0046294: formaldehyde catabolic process	0.00E+00
8	GO:0032928: regulation of superoxide anion generation	0.00E+00
9	GO:0016576: histone dephosphorylation	0.00E+00
10	GO:0018316: peptide cross-linking via L-cystine	0.00E+00
11	GO:0036172: thiamine salvage	0.00E+00
12	GO:0048856: anatomical structure development	0.00E+00
13	GO:1904215: regulation of protein import into chloroplast stroma	0.00E+00
14	GO:0080005: photosystem stoichiometry adjustment	7.60E-06
15	GO:0033014: tetrapyrrole biosynthetic process	5.73E-05
16	GO:2001141: regulation of RNA biosynthetic process	5.73E-05
17	GO:0009229: thiamine diphosphate biosynthetic process	1.56E-04
18	GO:0009228: thiamine biosynthetic process	2.23E-04
19	GO:0048438: floral whorl development	4.13E-04
20	GO:0006567: threonine catabolic process	4.13E-04
21	GO:0034970: histone H3-R2 methylation	4.13E-04
22	GO:0034972: histone H3-R26 methylation	4.13E-04
23	GO:0019343: cysteine biosynthetic process via cystathionine	4.13E-04
24	GO:0071266: 'de novo' L-methionine biosynthetic process	4.13E-04
25	GO:1902265: abscisic acid homeostasis	4.13E-04
26	GO:0019346: transsulfuration	4.13E-04
27	GO:0034971: histone H3-R17 methylation	4.13E-04
28	GO:0071454: cellular response to anoxia	4.13E-04
29	GO:0071461: cellular response to redox state	4.13E-04
30	GO:0009787: regulation of abscisic acid-activated signaling pathway	4.85E-04
31	GO:0071482: cellular response to light stimulus	5.92E-04
32	GO:0016122: xanthophyll metabolic process	8.93E-04
33	GO:0019919: peptidyl-arginine methylation, to asymmetrical-dimethyl arginine	8.93E-04
34	GO:0080153: negative regulation of reductive pentose-phosphate cycle	8.93E-04
35	GO:0010275: NAD(P)H dehydrogenase complex assembly	8.93E-04
36	GO:0010343: singlet oxygen-mediated programmed cell death	8.93E-04
37	GO:0046373: L-arabinose metabolic process	8.93E-04
38	GO:2000030: regulation of response to red or far red light	8.93E-04
39	GO:0050688: regulation of defense response to virus	8.93E-04
40	GO:0080064: 4,4-dimethyl-9beta,19-cyclopropylsterol oxidation	8.93E-04
41	GO:2000071: regulation of defense response by callose deposition	8.93E-04
42	GO:0006996: organelle organization	8.93E-04
43	GO:0035335: peptidyl-tyrosine dephosphorylation	8.93E-04
44	GO:0006352: DNA-templated transcription, initiation	1.12E-03
45	GO:0009658: chloroplast organization	1.38E-03
46	GO:0009767: photosynthetic electron transport chain	1.45E-03
47	GO:0000394: RNA splicing, via endonucleolytic cleavage and ligation	1.45E-03
48	GO:0031022: nuclear migration along microfilament	1.45E-03
49	GO:0006013: mannose metabolic process	1.45E-03
50	GO:0009150: purine ribonucleotide metabolic process	1.45E-03
51	GO:0015940: pantothenate biosynthetic process	1.45E-03
52	GO:0071492: cellular response to UV-A	1.45E-03
53	GO:0006696: ergosterol biosynthetic process	1.45E-03
54	GO:0071836: nectar secretion	1.45E-03
55	GO:0045493: xylan catabolic process	1.45E-03
56	GO:0045739: positive regulation of DNA repair	1.45E-03
57	GO:1902358: sulfate transmembrane transport	2.10E-03
58	GO:0010371: regulation of gibberellin biosynthetic process	2.10E-03
59	GO:0046653: tetrahydrofolate metabolic process	2.10E-03
60	GO:0009647: skotomorphogenesis	2.10E-03
61	GO:0009399: nitrogen fixation	2.10E-03
62	GO:0009963: positive regulation of flavonoid biosynthetic process	2.10E-03
63	GO:0051289: protein homotetramerization	2.10E-03
64	GO:0006882: cellular zinc ion homeostasis	2.10E-03
65	GO:0070534: protein K63-linked ubiquitination	2.82E-03
66	GO:0006545: glycine biosynthetic process	2.82E-03
67	GO:0071486: cellular response to high light intensity	2.82E-03
68	GO:0042274: ribosomal small subunit biogenesis	2.82E-03
69	GO:0031935: regulation of chromatin silencing	2.82E-03
70	GO:0009765: photosynthesis, light harvesting	2.82E-03
71	GO:0006221: pyrimidine nucleotide biosynthetic process	2.82E-03
72	GO:0006552: leucine catabolic process	2.82E-03
73	GO:0051567: histone H3-K9 methylation	2.82E-03
74	GO:0009649: entrainment of circadian clock	2.82E-03
75	GO:0006749: glutathione metabolic process	2.82E-03
76	GO:0000956: nuclear-transcribed mRNA catabolic process	2.82E-03
77	GO:0009902: chloroplast relocation	2.82E-03
78	GO:0034613: cellular protein localization	2.82E-03
79	GO:0006542: glutamine biosynthetic process	2.82E-03
80	GO:0016226: iron-sulfur cluster assembly	3.01E-03
81	GO:0009451: RNA modification	3.11E-03
82	GO:0007094: mitotic spindle assembly checkpoint	3.61E-03
83	GO:0010375: stomatal complex patterning	3.61E-03
84	GO:0000304: response to singlet oxygen	3.61E-03
85	GO:0009616: virus induced gene silencing	3.61E-03
86	GO:0010117: photoprotection	3.61E-03
87	GO:0016120: carotene biosynthetic process	3.61E-03
88	GO:0046283: anthocyanin-containing compound metabolic process	3.61E-03
89	GO:0045038: protein import into chloroplast thylakoid membrane	3.61E-03
90	GO:0016117: carotenoid biosynthetic process	3.87E-03
91	GO:0010051: xylem and phloem pattern formation	4.19E-03
92	GO:0006301: postreplication repair	4.47E-03
93	GO:0010304: PSII associated light-harvesting complex II catabolic process	4.47E-03
94	GO:0016070: RNA metabolic process	4.47E-03
95	GO:0006555: methionine metabolic process	4.47E-03
96	GO:0031053: primary miRNA processing	4.47E-03
97	GO:0045962: positive regulation of development, heterochronic	4.47E-03
98	GO:0009117: nucleotide metabolic process	4.47E-03
99	GO:0000741: karyogamy	4.47E-03
100	GO:0016458: gene silencing	4.47E-03
101	GO:0006520: cellular amino acid metabolic process	4.52E-03
102	GO:0019509: L-methionine salvage from methylthioadenosine	5.38E-03
103	GO:0010076: maintenance of floral meristem identity	5.38E-03
104	GO:0034389: lipid particle organization	5.38E-03
105	GO:0010016: shoot system morphogenesis	5.38E-03
106	GO:0009903: chloroplast avoidance movement	5.38E-03
107	GO:0010019: chloroplast-nucleus signaling pathway	5.38E-03
108	GO:1900056: negative regulation of leaf senescence	6.36E-03
109	GO:0010050: vegetative phase change	6.36E-03
110	GO:0030026: cellular manganese ion homeostasis	6.36E-03
111	GO:0080111: DNA demethylation	6.36E-03
112	GO:0009396: folic acid-containing compound biosynthetic process	6.36E-03
113	GO:0010038: response to metal ion	6.36E-03
114	GO:0006102: isocitrate metabolic process	7.40E-03
115	GO:0048564: photosystem I assembly	7.40E-03
116	GO:0045292: mRNA cis splicing, via spliceosome	7.40E-03
117	GO:0010928: regulation of auxin mediated signaling pathway	7.40E-03
118	GO:0009704: de-etiolation	7.40E-03
119	GO:0022900: electron transport chain	8.49E-03
120	GO:0009880: embryonic pattern specification	8.49E-03
121	GO:0044030: regulation of DNA methylation	8.49E-03
122	GO:0015995: chlorophyll biosynthetic process	9.54E-03
123	GO:0015780: nucleotide-sugar transport	9.65E-03
124	GO:0098656: anion transmembrane transport	9.65E-03
125	GO:0009821: alkaloid biosynthetic process	9.65E-03
126	GO:0046916: cellular transition metal ion homeostasis	9.65E-03
127	GO:0019432: triglyceride biosynthetic process	9.65E-03
128	GO:0006783: heme biosynthetic process	9.65E-03
129	GO:0009058: biosynthetic process	9.65E-03
130	GO:0006779: porphyrin-containing compound biosynthetic process	1.09E-02
131	GO:0035999: tetrahydrofolate interconversion	1.09E-02
132	GO:0010267: production of ta-siRNAs involved in RNA interference	1.09E-02
133	GO:0010380: regulation of chlorophyll biosynthetic process	1.09E-02
134	GO:0008356: asymmetric cell division	1.09E-02
135	GO:0006811: ion transport	1.17E-02
136	GO:0009641: shade avoidance	1.21E-02
137	GO:0055062: phosphate ion homeostasis	1.21E-02
138	GO:0006782: protoporphyrinogen IX biosynthetic process	1.21E-02
139	GO:0009688: abscisic acid biosynthetic process	1.21E-02
140	GO:0045036: protein targeting to chloroplast	1.21E-02
141	GO:0009910: negative regulation of flower development	1.22E-02
142	GO:0006816: calcium ion transport	1.34E-02
143	GO:0009682: induced systemic resistance	1.34E-02
144	GO:0043085: positive regulation of catalytic activity	1.34E-02
145	GO:0008285: negative regulation of cell proliferation	1.34E-02
146	GO:0006879: cellular iron ion homeostasis	1.34E-02
147	GO:0032259: methylation	1.37E-02
148	GO:0006790: sulfur compound metabolic process	1.48E-02
149	GO:0045037: protein import into chloroplast stroma	1.48E-02
150	GO:0010582: floral meristem determinacy	1.48E-02
151	GO:0005986: sucrose biosynthetic process	1.62E-02
152	GO:0030048: actin filament-based movement	1.62E-02
153	GO:0009640: photomorphogenesis	1.74E-02
154	GO:0009266: response to temperature stimulus	1.76E-02
155	GO:0034605: cellular response to heat	1.76E-02
156	GO:0010207: photosystem II assembly	1.76E-02
157	GO:0019253: reductive pentose-phosphate cycle	1.76E-02
158	GO:0009965: leaf morphogenesis	1.95E-02
159	GO:0006071: glycerol metabolic process	2.06E-02
160	GO:0000162: tryptophan biosynthetic process	2.06E-02
161	GO:0010025: wax biosynthetic process	2.06E-02
162	GO:0006508: proteolysis	2.10E-02
163	GO:0006487: protein N-linked glycosylation	2.22E-02
164	GO:0010073: meristem maintenance	2.38E-02
165	GO:0007017: microtubule-based process	2.38E-02
166	GO:0010224: response to UV-B	2.43E-02
167	GO:0006306: DNA methylation	2.55E-02
168	GO:0003333: amino acid transmembrane transport	2.55E-02
169	GO:0016998: cell wall macromolecule catabolic process	2.55E-02
170	GO:2000022: regulation of jasmonic acid mediated signaling pathway	2.72E-02
171	GO:0006730: one-carbon metabolic process	2.72E-02
172	GO:0010227: floral organ abscission	2.89E-02
173	GO:0006012: galactose metabolic process	2.89E-02
174	GO:0009693: ethylene biosynthetic process	2.89E-02
175	GO:0055114: oxidation-reduction process	3.04E-02
176	GO:0006817: phosphate ion transport	3.07E-02
177	GO:0006284: base-excision repair	3.07E-02
178	GO:0070417: cellular response to cold	3.25E-02
179	GO:0010118: stomatal movement	3.44E-02
180	GO:0010087: phloem or xylem histogenesis	3.44E-02
181	GO:0009958: positive gravitropism	3.63E-02
182	GO:0010197: polar nucleus fusion	3.63E-02
183	GO:0000398: mRNA splicing, via spliceosome	3.85E-02
184	GO:0009851: auxin biosynthetic process	4.01E-02
185	GO:0002229: defense response to oomycetes	4.21E-02
186	GO:0007264: small GTPase mediated signal transduction	4.41E-02
187	GO:0030163: protein catabolic process	4.62E-02
188	GO:0006281: DNA repair	4.99E-02

Rank	GO Term	Adjusted P value
1	GO:0004592: pantoate-beta-alanine ligase activity	0.00E+00
2	GO:0070009: serine-type aminopeptidase activity	0.00E+00
3	GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity	0.00E+00
4	GO:0009008: DNA-methyltransferase activity	0.00E+00
5	GO:0045436: lycopene beta cyclase activity	0.00E+00
6	GO:0009673: low-affinity phosphate transmembrane transporter activity	0.00E+00
7	GO:0030946: protein tyrosine phosphatase activity, metal-dependent	0.00E+00
8	GO:0008902: hydroxymethylpyrimidine kinase activity	0.00E+00
9	GO:0018738: S-formylglutathione hydrolase activity	0.00E+00
10	GO:0008972: phosphomethylpyrimidine kinase activity	0.00E+00
11	GO:0046905: phytoene synthase activity	0.00E+00
12	GO:0008170: N-methyltransferase activity	0.00E+00
13	GO:0004789: thiamine-phosphate diphosphorylase activity	0.00E+00
14	GO:0033947: mannosylglycoprotein endo-beta-mannosidase activity	0.00E+00
15	GO:0004417: hydroxyethylthiazole kinase activity	0.00E+00
16	GO:0004046: aminoacylase activity	7.60E-06
17	GO:0004848: ureidoglycolate hydrolase activity	2.63E-05
18	GO:0001053: plastid sigma factor activity	1.01E-04
19	GO:0016987: sigma factor activity	1.01E-04
20	GO:0008793: aromatic-amino-acid:2-oxoglutarate aminotransferase activity	4.13E-04
21	GO:0016784: 3-mercaptopyruvate sulfurtransferase activity	4.13E-04
22	GO:0004485: methylcrotonoyl-CoA carboxylase activity	4.13E-04
23	GO:0004123: cystathionine gamma-lyase activity	4.13E-04
24	GO:0046906: tetrapyrrole binding	4.13E-04
25	GO:0033984: indole-3-glycerol-phosphate lyase activity	4.13E-04
26	GO:0015085: calcium ion transmembrane transporter activity	4.13E-04
27	GO:0004793: threonine aldolase activity	4.13E-04
28	GO:0016783: sulfurtransferase activity	4.13E-04
29	GO:0004325: ferrochelatase activity	4.13E-04
30	GO:0004121: cystathionine beta-lyase activity	4.13E-04
31	GO:0051996: squalene synthase activity	4.13E-04
32	GO:0008732: L-allo-threonine aldolase activity	4.13E-04
33	GO:0048038: quinone binding	7.10E-04
34	GO:0004488: methylenetetrahydrofolate dehydrogenase (NADP+) activity	8.93E-04
35	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	8.93E-04
36	GO:0004477: methenyltetrahydrofolate cyclohydrolase activity	8.93E-04
37	GO:0004109: coproporphyrinogen oxidase activity	8.93E-04
38	GO:0004450: isocitrate dehydrogenase (NADP+) activity	8.93E-04
39	GO:0035241: protein-arginine omega-N monomethyltransferase activity	8.93E-04
40	GO:0004310: farnesyl-diphosphate farnesyltransferase activity	8.93E-04
41	GO:0016277: [myelin basic protein]-arginine N-methyltransferase activity	8.93E-04
42	GO:0035242: protein-arginine omega-N asymmetric methyltransferase activity	8.93E-04
43	GO:0016491: oxidoreductase activity	1.02E-03
44	GO:0008168: methyltransferase activity	1.29E-03
45	GO:0016787: hydrolase activity	1.34E-03
46	GO:0017176: phosphatidylinositol N-acetylglucosaminyltransferase activity	1.45E-03
47	GO:0008469: histone-arginine N-methyltransferase activity	1.45E-03
48	GO:0004180: carboxypeptidase activity	1.45E-03
49	GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity	1.45E-03
50	GO:0046524: sucrose-phosphate synthase activity	1.45E-03
51	GO:0003962: cystathionine gamma-synthase activity	1.45E-03
52	GO:0032947: protein complex scaffold	1.45E-03
53	GO:0003955: NAD(P)H dehydrogenase (quinone) activity	1.45E-03
54	GO:0019003: GDP binding	1.45E-03
55	GO:0000900: translation repressor activity, nucleic acid binding	1.45E-03
56	GO:0004075: biotin carboxylase activity	1.45E-03
57	GO:0005315: inorganic phosphate transmembrane transporter activity	1.45E-03
58	GO:0000254: C-4 methylsterol oxidase activity	2.10E-03
59	GO:0035529: NADH pyrophosphatase activity	2.10E-03
60	GO:0004792: thiosulfate sulfurtransferase activity	2.10E-03
61	GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity	2.10E-03
62	GO:0000339: RNA cap binding	2.10E-03
63	GO:0047627: adenylylsulfatase activity	2.10E-03
64	GO:0004176: ATP-dependent peptidase activity	2.75E-03
65	GO:0015368: calcium:cation antiporter activity	2.82E-03
66	GO:0004834: tryptophan synthase activity	2.82E-03
67	GO:0015369: calcium:proton antiporter activity	2.82E-03
68	GO:0052793: pectin acetylesterase activity	2.82E-03
69	GO:0009044: xylan 1,4-beta-xylosidase activity	2.82E-03
70	GO:0046556: alpha-L-arabinofuranosidase activity	2.82E-03
71	GO:0004356: glutamate-ammonia ligase activity	3.61E-03
72	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	4.32E-03
73	GO:0004069: L-aspartate:2-oxoglutarate aminotransferase activity	4.47E-03
74	GO:0000293: ferric-chelate reductase activity	4.47E-03
75	GO:0008080: N-acetyltransferase activity	4.52E-03
76	GO:0004559: alpha-mannosidase activity	5.38E-03
77	GO:0016157: sucrose synthase activity	5.38E-03
78	GO:0004144: diacylglycerol O-acyltransferase activity	5.38E-03
79	GO:0003886: DNA (cytosine-5-)-methyltransferase activity	5.38E-03
80	GO:0005338: nucleotide-sugar transmembrane transporter activity	6.36E-03
81	GO:0019899: enzyme binding	6.36E-03
82	GO:0008143: poly(A) binding	6.36E-03
83	GO:0008237: metallopeptidase activity	7.19E-03
84	GO:0016847: 1-aminocyclopropane-1-carboxylate synthase activity	7.40E-03
85	GO:0004034: aldose 1-epimerase activity	7.40E-03
86	GO:0008271: secondary active sulfate transmembrane transporter activity	8.49E-03
87	GO:0046914: transition metal ion binding	8.49E-03
88	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	9.33E-03
89	GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors	9.65E-03
90	GO:0071949: FAD binding	9.65E-03
91	GO:0016844: strictosidine synthase activity	1.09E-02
92	GO:0001055: RNA polymerase II activity	1.09E-02
93	GO:0015174: basic amino acid transmembrane transporter activity	1.09E-02
94	GO:0004222: metalloendopeptidase activity	1.17E-02
95	GO:0004713: protein tyrosine kinase activity	1.21E-02
96	GO:0004129: cytochrome-c oxidase activity	1.34E-02
97	GO:0001054: RNA polymerase I activity	1.34E-02
98	GO:0015116: sulfate transmembrane transporter activity	1.48E-02
99	GO:0001056: RNA polymerase III activity	1.48E-02
100	GO:0031072: heat shock protein binding	1.62E-02
101	GO:0004519: endonuclease activity	1.66E-02
102	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	1.76E-02
103	GO:0015293: symporter activity	1.95E-02
104	GO:0003887: DNA-directed DNA polymerase activity	2.06E-02
105	GO:0051536: iron-sulfur cluster binding	2.22E-02
106	GO:0008514: organic anion transmembrane transporter activity	3.07E-02
107	GO:0022857: transmembrane transporter activity	3.14E-02
108	GO:0051082: unfolded protein binding	3.34E-02
109	GO:0016853: isomerase activity	3.82E-02
110	GO:0003723: RNA binding	4.09E-02
111	GO:0004843: thiol-dependent ubiquitin-specific protease activity	4.21E-02
112	GO:0004518: nuclease activity	4.41E-02
113	GO:0030170: pyridoxal phosphate binding	4.62E-02

Rank	GO Term	Adjusted P value
1	GO:0030427: site of polarized growth	0.00E+00
2	GO:0009507: chloroplast	2.37E-16
3	GO:0009535: chloroplast thylakoid membrane	5.35E-05
4	GO:0031969: chloroplast membrane	9.66E-05
5	GO:0031972: chloroplast intermembrane space	4.13E-04
6	GO:0000152: nuclear ubiquitin ligase complex	4.13E-04
7	GO:0005845: mRNA cap binding complex	4.13E-04
8	GO:0009570: chloroplast stroma	4.86E-04
9	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	7.09E-04
10	GO:0080085: signal recognition particle, chloroplast targeting	8.93E-04
11	GO:0005846: nuclear cap binding complex	8.93E-04
12	GO:0005875: microtubule associated complex	2.05E-03
13	GO:1990726: Lsm1-7-Pat1 complex	2.10E-03
14	GO:0030286: dynein complex	2.82E-03
15	GO:0031372: UBC13-MMS2 complex	2.82E-03
16	GO:0009517: PSII associated light-harvesting complex II	2.82E-03
17	GO:0055035: plastid thylakoid membrane	3.61E-03
18	GO:0097526: spliceosomal tri-snRNP complex	3.61E-03
19	GO:0030140: trans-Golgi network transport vesicle	4.47E-03
20	GO:0009840: chloroplastic endopeptidase Clp complex	5.38E-03
21	GO:0005655: nucleolar ribonuclease P complex	5.38E-03
22	GO:0005689: U12-type spliceosomal complex	5.38E-03
23	GO:0000123: histone acetyltransferase complex	6.36E-03
24	GO:0005773: vacuole	6.99E-03
25	GO:0005688: U6 snRNP	7.40E-03
26	GO:0071004: U2-type prespliceosome	7.40E-03
27	GO:0046930: pore complex	8.49E-03
28	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	8.49E-03
29	GO:0005811: lipid particle	8.49E-03
30	GO:0005623: cell	9.33E-03
31	GO:0016604: nuclear body	1.09E-02
32	GO:0009941: chloroplast envelope	1.13E-02
33	GO:0071013: catalytic step 2 spliceosome	1.34E-02
34	GO:0048471: perinuclear region of cytoplasm	1.34E-02
35	GO:0005578: proteinaceous extracellular matrix	1.62E-02
36	GO:0009536: plastid	1.95E-02
37	GO:0000419: DNA-directed RNA polymerase V complex	2.06E-02
38	GO:0043234: protein complex	2.06E-02
39	GO:0042651: thylakoid membrane	2.38E-02
40	GO:0015935: small ribosomal subunit	2.55E-02
41	GO:0009532: plastid stroma	2.55E-02
42	GO:0005737: cytoplasm	3.69E-02
43	GO:0009523: photosystem II	4.01E-02
44	GO:0005777: peroxisome	4.19E-02