co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G08920

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0019685: photosynthesis, dark reaction	0.00E+00
2	GO:0010081: regulation of inflorescence meristem growth	0.00E+00
3	GO:0007037: vacuolar phosphate transport	0.00E+00
4	GO:0045176: apical protein localization	0.00E+00
5	GO:0090042: tubulin deacetylation	0.00E+00
6	GO:0000372: Group I intron splicing	0.00E+00
7	GO:0006003: fructose 2,6-bisphosphate metabolic process	0.00E+00
8	GO:1905177: tracheary element differentiation	0.00E+00
9	GO:0009451: RNA modification	1.93E-04
10	GO:0048564: photosystem I assembly	2.48E-04
11	GO:0015798: myo-inositol transport	2.63E-04
12	GO:0043087: regulation of GTPase activity	2.63E-04
13	GO:2000021: regulation of ion homeostasis	2.63E-04
14	GO:0043609: regulation of carbon utilization	2.63E-04
15	GO:0006436: tryptophanyl-tRNA aminoacylation	2.63E-04
16	GO:0051247: positive regulation of protein metabolic process	2.63E-04
17	GO:0090548: response to nitrate starvation	2.63E-04
18	GO:0000066: mitochondrial ornithine transport	2.63E-04
19	GO:2000905: negative regulation of starch metabolic process	2.63E-04
20	GO:0034757: negative regulation of iron ion transport	2.63E-04
21	GO:0006419: alanyl-tRNA aminoacylation	2.63E-04
22	GO:1902025: nitrate import	2.63E-04
23	GO:0000012: single strand break repair	2.63E-04
24	GO:0043266: regulation of potassium ion transport	2.63E-04
25	GO:0010080: regulation of floral meristem growth	2.63E-04
26	GO:0000373: Group II intron splicing	3.70E-04
27	GO:0001736: establishment of planar polarity	5.78E-04
28	GO:0080009: mRNA methylation	5.78E-04
29	GO:0060359: response to ammonium ion	5.78E-04
30	GO:0048255: mRNA stabilization	5.78E-04
31	GO:1905011: transmembrane phosphate ion transport from cytosol to vacuole	5.78E-04
32	GO:0006435: threonyl-tRNA aminoacylation	5.78E-04
33	GO:1900871: chloroplast mRNA modification	5.78E-04
34	GO:0010271: regulation of chlorophyll catabolic process	5.78E-04
35	GO:1901959: positive regulation of cutin biosynthetic process	5.78E-04
36	GO:0010582: floral meristem determinacy	6.76E-04
37	GO:0009793: embryo development ending in seed dormancy	7.55E-04
38	GO:0006094: gluconeogenesis	7.67E-04
39	GO:0090153: regulation of sphingolipid biosynthetic process	9.39E-04
40	GO:0043157: response to cation stress	9.39E-04
41	GO:0006000: fructose metabolic process	9.39E-04
42	GO:0080117: secondary growth	9.39E-04
43	GO:0010022: meristem determinacy	9.39E-04
44	GO:0048586: regulation of long-day photoperiodism, flowering	9.39E-04
45	GO:1904278: positive regulation of wax biosynthetic process	9.39E-04
46	GO:0010623: programmed cell death involved in cell development	9.39E-04
47	GO:0005992: trehalose biosynthetic process	1.18E-03
48	GO:2001141: regulation of RNA biosynthetic process	1.34E-03
49	GO:0046836: glycolipid transport	1.34E-03
50	GO:0051513: regulation of monopolar cell growth	1.34E-03
51	GO:0051639: actin filament network formation	1.34E-03
52	GO:0034059: response to anoxia	1.34E-03
53	GO:0009800: cinnamic acid biosynthetic process	1.34E-03
54	GO:0051764: actin crosslink formation	1.79E-03
55	GO:0051322: anaphase	1.79E-03
56	GO:0006661: phosphatidylinositol biosynthetic process	1.79E-03
57	GO:2000306: positive regulation of photomorphogenesis	1.79E-03
58	GO:0045723: positive regulation of fatty acid biosynthetic process	1.79E-03
59	GO:0010508: positive regulation of autophagy	1.79E-03
60	GO:0008295: spermidine biosynthetic process	1.79E-03
61	GO:0010158: abaxial cell fate specification	2.29E-03
62	GO:0006465: signal peptide processing	2.29E-03
63	GO:0080110: sporopollenin biosynthetic process	2.29E-03
64	GO:0048868: pollen tube development	2.32E-03
65	GO:0009740: gibberellic acid mediated signaling pathway	2.67E-03
66	GO:0048827: phyllome development	2.82E-03
67	GO:0009959: negative gravitropism	2.82E-03
68	GO:0009920: cell plate formation involved in plant-type cell wall biogenesis	2.82E-03
69	GO:0006559: L-phenylalanine catabolic process	2.82E-03
70	GO:0048831: regulation of shoot system development	2.82E-03
71	GO:0019243: methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione	2.82E-03
72	GO:0009416: response to light stimulus	3.38E-03
73	GO:0048509: regulation of meristem development	3.40E-03
74	GO:0006955: immune response	4.00E-03
75	GO:0010050: vegetative phase change	4.00E-03
76	GO:0006400: tRNA modification	4.00E-03
77	GO:0010029: regulation of seed germination	4.37E-03
78	GO:0045010: actin nucleation	4.65E-03
79	GO:0000105: histidine biosynthetic process	4.65E-03
80	GO:0042255: ribosome assembly	4.65E-03
81	GO:0046620: regulation of organ growth	4.65E-03
82	GO:0006353: DNA-templated transcription, termination	4.65E-03
83	GO:0070413: trehalose metabolism in response to stress	4.65E-03
84	GO:0009850: auxin metabolic process	4.65E-03
85	GO:0006002: fructose 6-phosphate metabolic process	5.32E-03
86	GO:0071482: cellular response to light stimulus	5.32E-03
87	GO:0009657: plastid organization	5.32E-03
88	GO:0000160: phosphorelay signal transduction system	5.67E-03
89	GO:0006098: pentose-phosphate shunt	6.03E-03
90	GO:0090305: nucleic acid phosphodiester bond hydrolysis	6.03E-03
91	GO:0010018: far-red light signaling pathway	6.77E-03
92	GO:1900865: chloroplast RNA modification	6.77E-03
93	GO:0048829: root cap development	7.54E-03
94	GO:0006949: syncytium formation	7.54E-03
95	GO:0006259: DNA metabolic process	7.54E-03
96	GO:0009299: mRNA transcription	7.54E-03
97	GO:0006535: cysteine biosynthetic process from serine	7.54E-03
98	GO:0006839: mitochondrial transport	7.79E-03
99	GO:0009750: response to fructose	8.35E-03
100	GO:0048765: root hair cell differentiation	8.35E-03
101	GO:0006265: DNA topological change	8.35E-03
102	GO:0006415: translational termination	8.35E-03
103	GO:0006352: DNA-templated transcription, initiation	8.35E-03
104	GO:0009926: auxin polar transport	8.82E-03
105	GO:0045037: protein import into chloroplast stroma	9.17E-03
106	GO:0009636: response to toxic substance	9.92E-03
107	GO:0010229: inflorescence development	1.00E-02
108	GO:0030036: actin cytoskeleton organization	1.00E-02
109	GO:0009725: response to hormone	1.00E-02
110	GO:0009658: chloroplast organization	1.01E-02
111	GO:0009887: animal organ morphogenesis	1.09E-02
112	GO:0010540: basipetal auxin transport	1.09E-02
113	GO:0006302: double-strand break repair	1.09E-02
114	GO:0010207: photosystem II assembly	1.09E-02
115	GO:0009664: plant-type cell wall organization	1.11E-02
116	GO:0090351: seedling development	1.18E-02
117	GO:0009736: cytokinin-activated signaling pathway	1.19E-02
118	GO:0042753: positive regulation of circadian rhythm	1.28E-02
119	GO:0007275: multicellular organism development	1.32E-02
120	GO:0080167: response to karrikin	1.33E-02
121	GO:0019344: cysteine biosynthetic process	1.38E-02
122	GO:0007010: cytoskeleton organization	1.38E-02
123	GO:0051017: actin filament bundle assembly	1.38E-02
124	GO:0006289: nucleotide-excision repair	1.38E-02
125	GO:0048316: seed development	1.46E-02
126	GO:0010073: meristem maintenance	1.48E-02
127	GO:0016575: histone deacetylation	1.48E-02
128	GO:0006418: tRNA aminoacylation for protein translation	1.48E-02
129	GO:0016998: cell wall macromolecule catabolic process	1.58E-02
130	GO:0048511: rhythmic process	1.58E-02
131	GO:0003333: amino acid transmembrane transport	1.58E-02
132	GO:0006730: one-carbon metabolic process	1.68E-02
133	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	1.79E-02
134	GO:0071215: cellular response to abscisic acid stimulus	1.79E-02
135	GO:0055085: transmembrane transport	1.81E-02
136	GO:0010089: xylem development	1.90E-02
137	GO:0010584: pollen exine formation	1.90E-02
138	GO:0019722: calcium-mediated signaling	1.90E-02
139	GO:0070417: cellular response to cold	2.01E-02
140	GO:0008033: tRNA processing	2.13E-02
141	GO:0010087: phloem or xylem histogenesis	2.13E-02
142	GO:0046323: glucose import	2.24E-02
143	GO:0010268: brassinosteroid homeostasis	2.24E-02
144	GO:0009958: positive gravitropism	2.24E-02
145	GO:0007059: chromosome segregation	2.36E-02
146	GO:0008654: phospholipid biosynthetic process	2.48E-02
147	GO:0048825: cotyledon development	2.48E-02
148	GO:0009749: response to glucose	2.48E-02
149	GO:0009790: embryo development	2.49E-02
150	GO:0016132: brassinosteroid biosynthetic process	2.61E-02
151	GO:0032502: developmental process	2.73E-02
152	GO:0009630: gravitropism	2.73E-02
153	GO:0010583: response to cyclopentenone	2.73E-02
154	GO:0040008: regulation of growth	2.81E-02
155	GO:0010090: trichome morphogenesis	2.86E-02
156	GO:0009828: plant-type cell wall loosening	2.99E-02
157	GO:0016125: sterol metabolic process	2.99E-02
158	GO:0009639: response to red or far red light	2.99E-02
159	GO:0006464: cellular protein modification process	2.99E-02
160	GO:0007267: cell-cell signaling	3.12E-02
161	GO:0000910: cytokinesis	3.25E-02
162	GO:0009734: auxin-activated signaling pathway	3.33E-02
163	GO:0009911: positive regulation of flower development	3.39E-02
164	GO:0001666: response to hypoxia	3.39E-02
165	GO:0010027: thylakoid membrane organization	3.39E-02
166	GO:0010411: xyloglucan metabolic process	3.80E-02
167	GO:0018298: protein-chromophore linkage	4.09E-02
168	GO:0009817: defense response to fungus, incompatible interaction	4.09E-02
169	GO:0048481: plant ovule development	4.09E-02
170	GO:0010311: lateral root formation	4.24E-02
171	GO:0009826: unidimensional cell growth	4.37E-02
172	GO:0006499: N-terminal protein myristoylation	4.38E-02
173	GO:0006865: amino acid transport	4.69E-02
174	GO:0009853: photorespiration	4.84E-02

Rank	GO Term	Adjusted P value
1	GO:0017005: 3'-tyrosyl-DNA phosphodiesterase activity	0.00E+00
2	GO:0051721: protein phosphatase 2A binding	0.00E+00
3	GO:0042903: tubulin deacetylase activity	0.00E+00
4	GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity	0.00E+00
5	GO:0003873: 6-phosphofructo-2-kinase activity	0.00E+00
6	GO:0043014: alpha-tubulin binding	0.00E+00
7	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	2.63E-04
8	GO:0004830: tryptophan-tRNA ligase activity	2.63E-04
9	GO:0003879: ATP phosphoribosyltransferase activity	2.63E-04
10	GO:0005227: calcium activated cation channel activity	2.63E-04
11	GO:0042834: peptidoglycan binding	2.63E-04
12	GO:0003881: CDP-diacylglycerol-inositol 3-phosphatidyltransferase activity	2.63E-04
13	GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity	2.63E-04
14	GO:0004813: alanine-tRNA ligase activity	2.63E-04
15	GO:0005290: L-histidine transmembrane transporter activity	2.63E-04
16	GO:0008158: hedgehog receptor activity	2.63E-04
17	GO:0004612: phosphoenolpyruvate carboxykinase (ATP) activity	2.63E-04
18	GO:0004805: trehalose-phosphatase activity	5.12E-04
19	GO:0050017: L-3-cyanoalanine synthase activity	5.78E-04
20	GO:0017118: lipoyltransferase activity	5.78E-04
21	GO:0004326: tetrahydrofolylpolyglutamate synthase activity	5.78E-04
22	GO:0043425: bHLH transcription factor binding	5.78E-04
23	GO:0004766: spermidine synthase activity	5.78E-04
24	GO:0000064: L-ornithine transmembrane transporter activity	5.78E-04
25	GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity	5.78E-04
26	GO:0050736: O-malonyltransferase activity	5.78E-04
27	GO:0004829: threonine-tRNA ligase activity	5.78E-04
28	GO:0009884: cytokinin receptor activity	5.78E-04
29	GO:0005366: myo-inositol:proton symporter activity	5.78E-04
30	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	8.62E-04
31	GO:0016805: dipeptidase activity	9.39E-04
32	GO:0005034: osmosensor activity	9.39E-04
33	GO:0045548: phenylalanine ammonia-lyase activity	9.39E-04
34	GO:0003913: DNA photolyase activity	9.39E-04
35	GO:0004148: dihydrolipoyl dehydrogenase activity	9.39E-04
36	GO:0015189: L-lysine transmembrane transporter activity	1.34E-03
37	GO:0017089: glycolipid transporter activity	1.34E-03
38	GO:0005354: galactose transmembrane transporter activity	1.34E-03
39	GO:0015181: arginine transmembrane transporter activity	1.34E-03
40	GO:0048487: beta-tubulin binding	1.34E-03
41	GO:0016149: translation release factor activity, codon specific	1.34E-03
42	GO:0004519: endonuclease activity	1.43E-03
43	GO:0001053: plastid sigma factor activity	1.79E-03
44	GO:0010011: auxin binding	1.79E-03
45	GO:0051861: glycolipid binding	1.79E-03
46	GO:0016987: sigma factor activity	1.79E-03
47	GO:0010328: auxin influx transmembrane transporter activity	1.79E-03
48	GO:0070628: proteasome binding	1.79E-03
49	GO:0042277: peptide binding	1.79E-03
50	GO:0005471: ATP:ADP antiporter activity	2.29E-03
51	GO:2001070: starch binding	2.82E-03
52	GO:0004332: fructose-bisphosphate aldolase activity	2.82E-03
53	GO:0031593: polyubiquitin binding	2.82E-03
54	GO:0004462: lactoylglutathione lyase activity	2.82E-03
55	GO:0004518: nuclease activity	3.06E-03
56	GO:0004656: procollagen-proline 4-dioxygenase activity	3.40E-03
57	GO:0019900: kinase binding	3.40E-03
58	GO:0004124: cysteine synthase activity	3.40E-03
59	GO:0009881: photoreceptor activity	4.00E-03
60	GO:0043022: ribosome binding	4.65E-03
61	GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)	5.32E-03
62	GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity	5.32E-03
63	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	5.49E-03
64	GO:0005096: GTPase activator activity	5.67E-03
65	GO:0004222: metalloendopeptidase activity	5.95E-03
66	GO:0003747: translation release factor activity	6.03E-03
67	GO:0003723: RNA binding	7.09E-03
68	GO:0004673: protein histidine kinase activity	7.54E-03
69	GO:0000049: tRNA binding	9.17E-03
70	GO:0000976: transcription regulatory region sequence-specific DNA binding	9.17E-03
71	GO:0000155: phosphorelay sensor kinase activity	1.00E-02
72	GO:0008081: phosphoric diester hydrolase activity	1.00E-02
73	GO:0003690: double-stranded DNA binding	1.23E-02
74	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	1.28E-02
75	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	1.28E-02
76	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	1.28E-02
77	GO:0031418: L-ascorbic acid binding	1.38E-02
78	GO:0004407: histone deacetylase activity	1.38E-02
79	GO:0043130: ubiquitin binding	1.38E-02
80	GO:0043424: protein histidine kinase binding	1.48E-02
81	GO:0004871: signal transducer activity	1.77E-02
82	GO:0030570: pectate lyase activity	1.79E-02
83	GO:0003727: single-stranded RNA binding	1.90E-02
84	GO:0004812: aminoacyl-tRNA ligase activity	2.01E-02
85	GO:0019843: rRNA binding	2.13E-02
86	GO:0004527: exonuclease activity	2.24E-02
87	GO:0008536: Ran GTPase binding	2.24E-02
88	GO:0005355: glucose transmembrane transporter activity	2.36E-02
89	GO:0010181: FMN binding	2.36E-02
90	GO:0050662: coenzyme binding	2.36E-02
91	GO:0019901: protein kinase binding	2.48E-02
92	GO:0015144: carbohydrate transmembrane transporter activity	2.55E-02
93	GO:0016762: xyloglucan:xyloglucosyl transferase activity	2.61E-02
94	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	2.74E-02
95	GO:0051015: actin filament binding	2.86E-02
96	GO:0000156: phosphorelay response regulator activity	2.86E-02
97	GO:0005351: sugar:proton symporter activity	2.88E-02
98	GO:0003684: damaged DNA binding	2.99E-02
99	GO:0016791: phosphatase activity	2.99E-02
100	GO:0008017: microtubule binding	3.08E-02
101	GO:0008237: metallopeptidase activity	3.12E-02
102	GO:0016597: amino acid binding	3.25E-02
103	GO:0042802: identical protein binding	3.73E-02
104	GO:0016798: hydrolase activity, acting on glycosyl bonds	3.80E-02
105	GO:0050897: cobalt ion binding	4.53E-02
106	GO:0003697: single-stranded DNA binding	4.84E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	2.56E-08
2	GO:0009574: preprophase band	7.67E-04
3	GO:0032432: actin filament bundle	1.34E-03
4	GO:0046658: anchored component of plasma membrane	1.66E-03
5	GO:0009330: DNA topoisomerase complex (ATP-hydrolyzing)	1.79E-03
6	GO:0031225: anchored component of membrane	2.10E-03
7	GO:0031209: SCAR complex	2.82E-03
8	GO:0009986: cell surface	4.00E-03
9	GO:0009705: plant-type vacuole membrane	5.78E-03
10	GO:0005884: actin filament	8.35E-03
11	GO:0005578: proteinaceous extracellular matrix	1.00E-02
12	GO:0005886: plasma membrane	1.02E-02
13	GO:0042651: thylakoid membrane	1.48E-02
14	GO:0009532: plastid stroma	1.58E-02
15	GO:0009505: plant-type cell wall	1.70E-02
16	GO:0005770: late endosome	2.24E-02
17	GO:0005759: mitochondrial matrix	2.68E-02
18	GO:0009295: nucleoid	3.12E-02
19	GO:0030529: intracellular ribonucleoprotein complex	3.39E-02
20	GO:0000151: ubiquitin ligase complex	4.09E-02
21	GO:0009535: chloroplast thylakoid membrane	4.48E-02
22	GO:0009536: plastid	4.81E-02