gene detail

Gene description

TAIR ID: AT4G02940

Short description: oxidoreductase, 2OG-Fe(II) oxygenase family protein

Pathogen responsiveness: -0.16

General responsiveness: -1.18

Orthologous

Rice: No orthologous gene

Maize:

GRMZM2G060079

Wheat:

TA.9123.1.A1_S_AT

GO biological process

response to karrikin

GO cellular component

unkown

GO molecular function

unkown

Protein domain

No domain annotation

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

Not involved in KEGG pathway

Transcriptional regulation

Regulator:
AT5G13790, AT1G24260, AT5G49450

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 1

click to view PPI network

Coexpression network

GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE26679_WT_GC  view
GSE56094_WT_HRPA-  view
GSE13739_EDS16_GO  view
GSE5686_WT_GO  view
GSE56094_WT_PSTDC3000  view
GSE45212_MED14_PSTDC3000_AVRRPT2  view

Differentially expressed condition

19 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE12856	Col, WT, control	Col, WT, Bg h	1.58	1.78E-07
GSE17500	Col, WT, control 0 h	Col, WT, PstDC3000 24 h	1.58	4.77E-04
GSE18978	Col, WT, control 24 h	Col, WT, PsmES4326 24 h	2.61	1.06E-05
GSE37269	Ei2, WT, control	Ei2, WT, TEV 21 d	-1.50	3.83E-02
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 12 h	2.81	1.34E-12
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 4 h	2.39	1.55E-11
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 8 h	2.89	7.18E-13
GSE45214	Col, med16, PstDC3000 AvrRpt2 0 h	Col, med16, PstDC3000 AvrRpt2 4 h	1.91	1.47E-07
GSE50526	Col, WT, mock 24 h	Col, WT, A. brassicicola 24 h	2.38	1.24E-03
GSE50526	Col, WT, mock 9 h	Col, WT, A. brassicicola 9 h	1.96	2.65E-03
GSE5520	Col, WT, control 10 h	Col, WT, Cor- 10 h	1.90	4.54E-04
GSE56094	Col, WT, control 10 h	Col, WT, PstDC3000 10 h	1.64	5.88E-08
GSE56094	Col, WT, control 11 h	Col, WT, PstDC3000 11 h	1.96	4.10E-10
GSE56094	Col, WT, control 11 h	Col, WT, hrpA- 11 h	1.63	3.51E-07
GSE56094	Col, WT, control 12 h	Col, WT, PstDC3000 12 h	2.29	1.49E-12
GSE56094	Col, WT, control 13 h	Col, WT, PstDC3000 13 h	2.31	4.55E-13
GSE56094	Col, WT, control 9 h	Col, WT, PstDC3000 9 h	2.12	5.88E-11
GSE5615	Col, WT, GST 4 h	Col, WT, GST+NPP1 4 h	1.69	2.43E-07
GSE5616	Col, WT, water 6 h	Col, WT, P. infestans 6 h	1.76	6.28E-08