co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G02940

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:2001253: regulation of histone H3-K36 trimethylation	0.00E+00
2	GO:0018063: cytochrome c-heme linkage	0.00E+00
3	GO:0010793: regulation of mRNA export from nucleus	0.00E+00
4	GO:0051553: flavone biosynthetic process	0.00E+00
5	GO:0010055: atrichoblast differentiation	0.00E+00
6	GO:0043620: regulation of DNA-templated transcription in response to stress	0.00E+00
7	GO:0040008: regulation of growth	3.00E-06
8	GO:0009620: response to fungus	1.06E-05
9	GO:0051707: response to other organism	5.19E-05
10	GO:0009617: response to bacterium	7.14E-05
11	GO:0034214: protein hexamerization	1.69E-04
12	GO:0046246: terpene biosynthetic process	1.69E-04
13	GO:0006680: glucosylceramide catabolic process	1.69E-04
14	GO:0032107: regulation of response to nutrient levels	1.69E-04
15	GO:0010112: regulation of systemic acquired resistance	1.95E-04
16	GO:0009835: fruit ripening	1.95E-04
17	GO:0051607: defense response to virus	1.98E-04
18	GO:0042742: defense response to bacterium	2.44E-04
19	GO:0009611: response to wounding	2.48E-04
20	GO:0033512: L-lysine catabolic process to acetyl-CoA via saccharopine	3.83E-04
21	GO:0019725: cellular homeostasis	3.83E-04
22	GO:0071497: cellular response to freezing	3.83E-04
23	GO:0050684: regulation of mRNA processing	3.83E-04
24	GO:0019374: galactolipid metabolic process	3.83E-04
25	GO:0018315: molybdenum incorporation into molybdenum-molybdopterin complex	3.83E-04
26	GO:0009751: response to salicylic acid	3.92E-04
27	GO:0008152: metabolic process	4.81E-04
28	GO:0032784: regulation of DNA-templated transcription, elongation	6.25E-04
29	GO:0071398: cellular response to fatty acid	6.25E-04
30	GO:0010186: positive regulation of cellular defense response	6.25E-04
31	GO:0010476: gibberellin mediated signaling pathway	6.25E-04
32	GO:0010325: raffinose family oligosaccharide biosynthetic process	6.25E-04
33	GO:0042218: 1-aminocyclopropane-1-carboxylate biosynthetic process	6.25E-04
34	GO:0080024: indolebutyric acid metabolic process	8.93E-04
35	GO:0001676: long-chain fatty acid metabolic process	8.93E-04
36	GO:0010116: positive regulation of abscisic acid biosynthetic process	8.93E-04
37	GO:0070301: cellular response to hydrogen peroxide	8.93E-04
38	GO:0002239: response to oomycetes	8.93E-04
39	GO:0009693: ethylene biosynthetic process	9.28E-04
40	GO:1901002: positive regulation of response to salt stress	1.18E-03
41	GO:0015867: ATP transport	1.18E-03
42	GO:0060548: negative regulation of cell death	1.18E-03
43	GO:0009939: positive regulation of gibberellic acid mediated signaling pathway	1.18E-03
44	GO:0048830: adventitious root development	1.18E-03
45	GO:0006891: intra-Golgi vesicle-mediated transport	1.54E-03
46	GO:0006635: fatty acid beta-oxidation	1.54E-03
47	GO:0015031: protein transport	1.61E-03
48	GO:0009759: indole glucosinolate biosynthetic process	1.85E-03
49	GO:0015866: ADP transport	1.85E-03
50	GO:0006777: Mo-molybdopterin cofactor biosynthetic process	1.85E-03
51	GO:0010256: endomembrane system organization	1.85E-03
52	GO:0048444: floral organ morphogenesis	2.22E-03
53	GO:0030643: cellular phosphate ion homeostasis	2.22E-03
54	GO:0010150: leaf senescence	2.60E-03
55	GO:0050829: defense response to Gram-negative bacterium	2.61E-03
56	GO:1900057: positive regulation of leaf senescence	2.61E-03
57	GO:0000122: negative regulation of transcription from RNA polymerase II promoter	2.61E-03
58	GO:1902074: response to salt	2.61E-03
59	GO:0016311: dephosphorylation	2.74E-03
60	GO:0030091: protein repair	3.02E-03
61	GO:0006605: protein targeting	3.02E-03
62	GO:0006644: phospholipid metabolic process	3.02E-03
63	GO:0010311: lateral root formation	3.03E-03
64	GO:0009813: flavonoid biosynthetic process	3.03E-03
65	GO:0048527: lateral root development	3.33E-03
66	GO:0010204: defense response signaling pathway, resistance gene-independent	3.46E-03
67	GO:0017004: cytochrome complex assembly	3.46E-03
68	GO:0009056: catabolic process	3.91E-03
69	GO:0007338: single fertilization	3.91E-03
70	GO:0008202: steroid metabolic process	4.38E-03
71	GO:0009638: phototropism	4.38E-03
72	GO:0090332: stomatal closure	4.38E-03
73	GO:0009737: response to abscisic acid	4.45E-03
74	GO:0042542: response to hydrogen peroxide	4.51E-03
75	GO:0019538: protein metabolic process	4.87E-03
76	GO:0009870: defense response signaling pathway, resistance gene-dependent	4.87E-03
77	GO:0009688: abscisic acid biosynthetic process	4.87E-03
78	GO:0009641: shade avoidance	4.87E-03
79	GO:0016441: posttranscriptional gene silencing	4.87E-03
80	GO:0010629: negative regulation of gene expression	4.87E-03
81	GO:0051555: flavonol biosynthetic process	4.87E-03
82	GO:0055114: oxidation-reduction process	4.94E-03
83	GO:0006970: response to osmotic stress	4.96E-03
84	GO:0009636: response to toxic substance	5.27E-03
85	GO:0009682: induced systemic resistance	5.38E-03
86	GO:0052544: defense response by callose deposition in cell wall	5.38E-03
87	GO:0006415: translational termination	5.38E-03
88	GO:0009684: indoleacetic acid biosynthetic process	5.38E-03
89	GO:0009723: response to ethylene	5.43E-03
90	GO:0002213: defense response to insect	5.91E-03
91	GO:0045037: protein import into chloroplast stroma	5.91E-03
92	GO:0006890: retrograde vesicle-mediated transport, Golgi to ER	5.91E-03
93	GO:0071365: cellular response to auxin stimulus	5.91E-03
94	GO:0045893: positive regulation of transcription, DNA-templated	5.95E-03
95	GO:0009785: blue light signaling pathway	6.46E-03
96	GO:0090351: seedling development	7.60E-03
97	GO:0006886: intracellular protein transport	7.76E-03
98	GO:0000162: tryptophan biosynthetic process	8.20E-03
99	GO:0009695: jasmonic acid biosynthetic process	9.44E-03
100	GO:0051302: regulation of cell division	9.44E-03
101	GO:0006874: cellular calcium ion homeostasis	9.44E-03
102	GO:0016114: terpenoid biosynthetic process	1.01E-02
103	GO:0016998: cell wall macromolecule catabolic process	1.01E-02
104	GO:0016226: iron-sulfur cluster assembly	1.08E-02
105	GO:0071456: cellular response to hypoxia	1.08E-02
106	GO:0030245: cellulose catabolic process	1.08E-02
107	GO:0042147: retrograde transport, endosome to Golgi	1.28E-02
108	GO:0009414: response to water deprivation	1.35E-02
109	GO:0010118: stomatal movement	1.36E-02
110	GO:0006520: cellular amino acid metabolic process	1.43E-02
111	GO:0010182: sugar mediated signaling pathway	1.43E-02
112	GO:0046323: glucose import	1.43E-02
113	GO:0009734: auxin-activated signaling pathway	1.50E-02
114	GO:0048544: recognition of pollen	1.51E-02
115	GO:0006623: protein targeting to vacuole	1.58E-02
116	GO:0071554: cell wall organization or biogenesis	1.66E-02
117	GO:0002229: defense response to oomycetes	1.66E-02
118	GO:0010193: response to ozone	1.66E-02
119	GO:0000302: response to reactive oxygen species	1.66E-02
120	GO:0009630: gravitropism	1.74E-02
121	GO:0009567: double fertilization forming a zygote and endosperm	1.90E-02
122	GO:0019760: glucosinolate metabolic process	1.90E-02
123	GO:0010029: regulation of seed germination	2.24E-02
124	GO:0009816: defense response to bacterium, incompatible interaction	2.24E-02
125	GO:0006906: vesicle fusion	2.33E-02
126	GO:0009627: systemic acquired resistance	2.33E-02
127	GO:0009817: defense response to fungus, incompatible interaction	2.61E-02
128	GO:0006508: proteolysis	2.65E-02
129	GO:0010043: response to zinc ion	2.89E-02
130	GO:0009651: response to salt stress	3.07E-02
131	GO:0006099: tricarboxylic acid cycle	3.18E-02
132	GO:0006839: mitochondrial transport	3.38E-02
133	GO:0006887: exocytosis	3.49E-02
134	GO:0006897: endocytosis	3.49E-02
135	GO:0006631: fatty acid metabolic process	3.49E-02
136	GO:0010114: response to red light	3.69E-02
137	GO:0007275: multicellular organism development	3.81E-02
138	GO:0006869: lipid transport	3.93E-02
139	GO:0009965: leaf morphogenesis	4.01E-02
140	GO:0006855: drug transmembrane transport	4.12E-02
141	GO:0009809: lignin biosynthetic process	4.57E-02
142	GO:0009736: cytokinin-activated signaling pathway	4.57E-02
143	GO:0009753: response to jasmonic acid	4.73E-02
144	GO:0006857: oligopeptide transport	4.79E-02
145	GO:0009909: regulation of flower development	4.91E-02

Rank	GO Term	Adjusted P value
1	GO:0015575: mannitol transmembrane transporter activity	0.00E+00
2	GO:0102867: molybdenum cofactor sulfurtransferase activity	0.00E+00
3	GO:0015591: D-ribose transmembrane transporter activity	0.00E+00
4	GO:0015148: D-xylose transmembrane transporter activity	0.00E+00
5	GO:0097008: (3E)-4,8-dimethyl-1,3,7-nonatriene synthase activity	0.00E+00
6	GO:0005365: myo-inositol transmembrane transporter activity	0.00E+00
7	GO:0015576: sorbitol transmembrane transporter activity	0.00E+00
8	GO:0033759: flavone synthase activity	0.00E+00
9	GO:0097007: 4,8,12-trimethyltrideca-1,3,7,11-tetraene synthase activity	0.00E+00
10	GO:0004348: glucosylceramidase activity	1.69E-04
11	GO:0015168: glycerol transmembrane transporter activity	1.69E-04
12	GO:0009000: selenocysteine lyase activity	1.69E-04
13	GO:0004149: dihydrolipoyllysine-residue succinyltransferase activity	1.69E-04
14	GO:0016229: steroid dehydrogenase activity	1.69E-04
15	GO:0010179: IAA-Ala conjugate hydrolase activity	1.69E-04
16	GO:0070401: NADP+ binding	1.69E-04
17	GO:0050736: O-malonyltransferase activity	3.83E-04
18	GO:0010331: gibberellin binding	3.83E-04
19	GO:0032934: sterol binding	3.83E-04
20	GO:0003955: NAD(P)H dehydrogenase (quinone) activity	6.25E-04
21	GO:0008265: Mo-molybdopterin cofactor sulfurase activity	6.25E-04
22	GO:0004838: L-tyrosine:2-oxoglutarate aminotransferase activity	6.25E-04
23	GO:0001046: core promoter sequence-specific DNA binding	6.49E-04
24	GO:0008106: alcohol dehydrogenase (NADP+) activity	8.93E-04
25	GO:0016149: translation release factor activity, codon specific	8.93E-04
26	GO:0010178: IAA-amino acid conjugate hydrolase activity	8.93E-04
27	GO:0016656: monodehydroascorbate reductase (NADH) activity	8.93E-04
28	GO:0005354: galactose transmembrane transporter activity	8.93E-04
29	GO:0008810: cellulase activity	9.28E-04
30	GO:0003995: acyl-CoA dehydrogenase activity	1.18E-03
31	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.18E-03
32	GO:0018685: alkane 1-monooxygenase activity	1.50E-03
33	GO:0003997: acyl-CoA oxidase activity	1.50E-03
34	GO:0030151: molybdenum ion binding	1.50E-03
35	GO:0015145: monosaccharide transmembrane transporter activity	1.50E-03
36	GO:0016791: phosphatase activity	1.87E-03
37	GO:0030170: pyridoxal phosphate binding	1.97E-03
38	GO:0008237: metallopeptidase activity	1.98E-03
39	GO:0102391: decanoate--CoA ligase activity	2.22E-03
40	GO:0005347: ATP transmembrane transporter activity	2.22E-03
41	GO:0008113: peptide-methionine (S)-S-oxide reductase activity	2.22E-03
42	GO:0015217: ADP transmembrane transporter activity	2.22E-03
43	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	2.22E-03
44	GO:0004620: phospholipase activity	2.61E-03
45	GO:0004467: long-chain fatty acid-CoA ligase activity	2.61E-03
46	GO:0008194: UDP-glycosyltransferase activity	2.99E-03
47	GO:0005544: calcium-dependent phospholipid binding	3.02E-03
48	GO:0004033: aldo-keto reductase (NADP) activity	3.02E-03
49	GO:0047893: flavonol 3-O-glucosyltransferase activity	3.02E-03
50	GO:0052747: sinapyl alcohol dehydrogenase activity	3.02E-03
51	GO:0016847: 1-aminocyclopropane-1-carboxylate synthase activity	3.02E-03
52	GO:0008142: oxysterol binding	3.46E-03
53	GO:0003993: acid phosphatase activity	3.81E-03
54	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	3.91E-03
55	GO:0003747: translation release factor activity	3.91E-03
56	GO:0047617: acyl-CoA hydrolase activity	4.38E-03
57	GO:0005198: structural molecule activity	5.27E-03
58	GO:0050660: flavin adenine dinucleotide binding	5.43E-03
59	GO:0045551: cinnamyl-alcohol dehydrogenase activity	5.91E-03
60	GO:0005217: intracellular ligand-gated ion channel activity	7.60E-03
61	GO:0004970: ionotropic glutamate receptor activity	7.60E-03
62	GO:0080043: quercetin 3-O-glucosyltransferase activity	8.22E-03
63	GO:0080044: quercetin 7-O-glucosyltransferase activity	8.22E-03
64	GO:0004722: protein serine/threonine phosphatase activity	8.39E-03
65	GO:0051536: iron-sulfur cluster binding	8.81E-03
66	GO:0031418: L-ascorbic acid binding	8.81E-03
67	GO:0035251: UDP-glucosyltransferase activity	1.01E-02
68	GO:0016758: transferase activity, transferring hexosyl groups	1.10E-02
69	GO:0004499: N,N-dimethylaniline monooxygenase activity	1.21E-02
70	GO:0008565: protein transporter activity	1.35E-02
71	GO:0030276: clathrin binding	1.43E-02
72	GO:0015297: antiporter activity	1.49E-02
73	GO:0010181: FMN binding	1.51E-02
74	GO:0005355: glucose transmembrane transporter activity	1.51E-02
75	GO:0008483: transaminase activity	1.99E-02
76	GO:0016413: O-acetyltransferase activity	2.07E-02
77	GO:0051213: dioxygenase activity	2.16E-02
78	GO:0030247: polysaccharide binding	2.42E-02
79	GO:0004721: phosphoprotein phosphatase activity	2.42E-02
80	GO:0004806: triglyceride lipase activity	2.42E-02
81	GO:0016740: transferase activity	2.59E-02
82	GO:0015238: drug transmembrane transporter activity	2.70E-02
83	GO:0020037: heme binding	2.77E-02
84	GO:0030145: manganese ion binding	2.89E-02
85	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	3.08E-02
86	GO:0019825: oxygen binding	3.13E-02
87	GO:0016757: transferase activity, transferring glycosyl groups	3.14E-02
88	GO:0000149: SNARE binding	3.28E-02
89	GO:0004712: protein serine/threonine/tyrosine kinase activity	3.28E-02
90	GO:0051539: 4 iron, 4 sulfur cluster binding	3.38E-02
91	GO:0050661: NADP binding	3.38E-02
92	GO:0046872: metal ion binding	3.56E-02
93	GO:0005484: SNAP receptor activity	3.69E-02
94	GO:0005525: GTP binding	3.74E-02
95	GO:0042803: protein homodimerization activity	3.76E-02
96	GO:0004871: signal transducer activity	3.76E-02
97	GO:0003924: GTPase activity	4.41E-02
98	GO:0005506: iron ion binding	4.73E-02
99	GO:0045330: aspartyl esterase activity	4.91E-02

Rank	GO Term	Adjusted P value
1	GO:0030121: AP-1 adaptor complex	0.00E+00
2	GO:0005886: plasma membrane	7.82E-05
3	GO:0045252: oxoglutarate dehydrogenase complex	1.69E-04
4	GO:0017119: Golgi transport complex	2.75E-04
5	GO:0005794: Golgi apparatus	3.43E-04
6	GO:0030658: transport vesicle membrane	8.93E-04
7	GO:0016021: integral component of membrane	1.63E-03
8	GO:0005789: endoplasmic reticulum membrane	2.31E-03
9	GO:0005788: endoplasmic reticulum lumen	2.35E-03
10	GO:0009986: cell surface	2.61E-03
11	GO:0030131: clathrin adaptor complex	3.02E-03
12	GO:0005779: integral component of peroxisomal membrane	3.46E-03
13	GO:0046658: anchored component of plasma membrane	3.70E-03
14	GO:0005783: endoplasmic reticulum	6.66E-03
15	GO:0005802: trans-Golgi network	9.86E-03
16	GO:0005905: clathrin-coated pit	1.01E-02
17	GO:0005768: endosome	1.20E-02
18	GO:0031965: nuclear membrane	1.58E-02
19	GO:0019898: extrinsic component of membrane	1.58E-02
20	GO:0071944: cell periphery	1.82E-02
21	GO:0016020: membrane	2.71E-02
22	GO:0031201: SNARE complex	3.49E-02
23	GO:0031225: anchored component of membrane	3.51E-02
24	GO:0005743: mitochondrial inner membrane	4.11E-02
25	GO:0043231: intracellular membrane-bounded organelle	4.86E-02