Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G57080

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0009249: protein lipoylation0.00E+00
2GO:0071000: response to magnetism0.00E+00
3GO:0019279: L-methionine biosynthetic process from L-homoserine via cystathionine0.00E+00
4GO:0032928: regulation of superoxide anion generation0.00E+00
5GO:0009583: detection of light stimulus0.00E+00
6GO:0009106: lipoate metabolic process0.00E+00
7GO:0010117: photoprotection8.32E-06
8GO:1900426: positive regulation of defense response to bacterium6.42E-05
9GO:0019343: cysteine biosynthetic process via cystathionine7.07E-05
10GO:0034970: histone H3-R2 methylation7.07E-05
11GO:0034972: histone H3-R26 methylation7.07E-05
12GO:0071266: 'de novo' L-methionine biosynthetic process7.07E-05
13GO:0034971: histone H3-R17 methylation7.07E-05
14GO:0072387: flavin adenine dinucleotide metabolic process7.07E-05
15GO:0048438: floral whorl development7.07E-05
16GO:0019346: transsulfuration7.07E-05
17GO:0010343: singlet oxygen-mediated programmed cell death1.70E-04
18GO:0010617: circadian regulation of calcium ion oscillation1.70E-04
19GO:1901529: positive regulation of anion channel activity1.70E-04
20GO:0080064: 4,4-dimethyl-9beta,19-cyclopropylsterol oxidation1.70E-04
21GO:0000002: mitochondrial genome maintenance1.70E-04
22GO:0099402: plant organ development1.70E-04
23GO:0016122: xanthophyll metabolic process1.70E-04
24GO:0019919: peptidyl-arginine methylation, to asymmetrical-dimethyl arginine1.70E-04
25GO:0000394: RNA splicing, via endonucleolytic cleavage and ligation2.86E-04
26GO:1902448: positive regulation of shade avoidance2.86E-04
27GO:0009961: response to 1-aminocyclopropane-1-carboxylic acid2.86E-04
28GO:1901672: positive regulation of systemic acquired resistance2.86E-04
29GO:0009432: SOS response2.86E-04
30GO:1901332: negative regulation of lateral root development4.15E-04
31GO:1902290: positive regulation of defense response to oomycetes4.15E-04
32GO:0000730: DNA recombinase assembly4.15E-04
33GO:0031935: regulation of chromatin silencing5.53E-04
34GO:1902347: response to strigolactone5.53E-04
35GO:0006749: glutathione metabolic process5.53E-04
36GO:0010375: stomatal complex patterning7.00E-04
37GO:0046283: anthocyanin-containing compound metabolic process7.00E-04
38GO:0009107: lipoate biosynthetic process7.00E-04
39GO:0060918: auxin transport8.57E-04
40GO:0031053: primary miRNA processing8.57E-04
41GO:0045962: positive regulation of development, heterochronic8.57E-04
42GO:1901371: regulation of leaf morphogenesis8.57E-04
43GO:0000741: karyogamy8.57E-04
44GO:0016070: RNA metabolic process8.57E-04
45GO:0010310: regulation of hydrogen peroxide metabolic process1.02E-03
46GO:0010076: maintenance of floral meristem identity1.02E-03
47GO:0010244: response to low fluence blue light stimulus by blue low-fluence system1.02E-03
48GO:0071446: cellular response to salicylic acid stimulus1.19E-03
49GO:0042148: strand invasion1.19E-03
50GO:0051510: regulation of unidimensional cell growth1.19E-03
51GO:0080111: DNA demethylation1.19E-03
52GO:0045292: mRNA cis splicing, via spliceosome1.37E-03
53GO:0009704: de-etiolation1.37E-03
54GO:0010928: regulation of auxin mediated signaling pathway1.37E-03
55GO:0042255: ribosome assembly1.37E-03
56GO:1900150: regulation of defense response to fungus1.37E-03
57GO:0019430: removal of superoxide radicals1.56E-03
58GO:0022900: electron transport chain1.56E-03
59GO:0010100: negative regulation of photomorphogenesis1.56E-03
60GO:0010212: response to ionizing radiation1.56E-03
61GO:2000031: regulation of salicylic acid mediated signaling pathway1.56E-03
62GO:0015780: nucleotide-sugar transport1.76E-03
63GO:0009638: phototropism1.97E-03
64GO:0032259: methylation2.04E-03
65GO:0009688: abscisic acid biosynthetic process2.19E-03
66GO:0006312: mitotic recombination2.64E-03
67GO:0010582: floral meristem determinacy2.64E-03
68GO:0050826: response to freezing2.88E-03
69GO:0009785: blue light signaling pathway2.88E-03
70GO:0010075: regulation of meristem growth2.88E-03
71GO:0009266: response to temperature stimulus3.12E-03
72GO:0000162: tryptophan biosynthetic process3.63E-03
73GO:2000377: regulation of reactive oxygen species metabolic process3.89E-03
74GO:0010118: stomatal movement5.93E-03
75GO:0009958: positive gravitropism6.24E-03
76GO:0010197: polar nucleus fusion6.24E-03
77GO:0009646: response to absence of light6.56E-03
78GO:0042752: regulation of circadian rhythm6.56E-03
79GO:0009851: auxin biosynthetic process6.89E-03
80GO:0009658: chloroplast organization7.36E-03
81GO:0007264: small GTPase mediated signal transduction7.56E-03
82GO:0032502: developmental process7.56E-03
83GO:0006310: DNA recombination8.25E-03
84GO:0016126: sterol biosynthetic process9.34E-03
85GO:0009615: response to virus9.34E-03
86GO:0009816: defense response to bacterium, incompatible interaction9.71E-03
87GO:0018298: protein-chromophore linkage1.13E-02
88GO:0008219: cell death1.13E-02
89GO:0009407: toxin catabolic process1.21E-02
90GO:0010218: response to far red light1.21E-02
91GO:0006811: ion transport1.21E-02
92GO:0009910: negative regulation of flower development1.25E-02
93GO:0009637: response to blue light1.33E-02
94GO:0006281: DNA repair1.35E-02
95GO:0010114: response to red light1.59E-02
96GO:0009640: photomorphogenesis1.59E-02
97GO:0009644: response to high light intensity1.68E-02
98GO:0008643: carbohydrate transport1.68E-02
99GO:0009636: response to toxic substance1.73E-02
100GO:0009965: leaf morphogenesis1.73E-02
101GO:0006260: DNA replication1.82E-02
102GO:0000165: MAPK cascade1.82E-02
103GO:0009585: red, far-red light phototransduction1.97E-02
104GO:0051603: proteolysis involved in cellular protein catabolic process2.01E-02
105GO:0006417: regulation of translation2.11E-02
106GO:0009909: regulation of flower development2.11E-02
107GO:0009416: response to light stimulus2.40E-02
108GO:0006396: RNA processing2.58E-02
109GO:0000398: mRNA splicing, via spliceosome2.80E-02
110GO:0007623: circadian rhythm3.73E-02
111GO:0009451: RNA modification3.79E-02
112GO:0010228: vegetative to reproductive phase transition of meristem3.85E-02
113GO:0006470: protein dephosphorylation4.10E-02
114GO:0008380: RNA splicing4.23E-02
115GO:0009617: response to bacterium4.23E-02
116GO:0016567: protein ubiquitination4.39E-02
117GO:0045944: positive regulation of transcription from RNA polymerase II promoter4.81E-02
RankGO TermAdjusted P value
1GO:0033819: lipoyl(octanoyl) transferase activity0.00E+00
2GO:0033947: mannosylglycoprotein endo-beta-mannosidase activity0.00E+00
3GO:0004848: ureidoglycolate hydrolase activity1.08E-06
4GO:0033984: indole-3-glycerol-phosphate lyase activity7.07E-05
5GO:0004121: cystathionine beta-lyase activity7.07E-05
6GO:0004123: cystathionine gamma-lyase activity7.07E-05
7GO:0008168: methyltransferase activity1.12E-04
8GO:0016415: octanoyltransferase activity1.70E-04
9GO:0016277: [myelin basic protein]-arginine N-methyltransferase activity1.70E-04
10GO:0017118: lipoyltransferase activity1.70E-04
11GO:0035242: protein-arginine omega-N asymmetric methyltransferase activity1.70E-04
12GO:0035241: protein-arginine omega-N monomethyltransferase activity1.70E-04
13GO:0003962: cystathionine gamma-synthase activity2.86E-04
14GO:0000900: translation repressor activity, nucleic acid binding2.86E-04
15GO:0019003: GDP binding2.86E-04
16GO:0008469: histone-arginine N-methyltransferase activity2.86E-04
17GO:0000254: C-4 methylsterol oxidase activity4.15E-04
18GO:0000339: RNA cap binding4.15E-04
19GO:0009882: blue light photoreceptor activity4.15E-04
20GO:0004834: tryptophan synthase activity5.53E-04
21GO:0004784: superoxide dismutase activity8.57E-04
22GO:0005338: nucleotide-sugar transmembrane transporter activity1.19E-03
23GO:0000150: recombinase activity1.19E-03
24GO:0000400: four-way junction DNA binding1.37E-03
25GO:0004525: ribonuclease III activity1.37E-03
26GO:0004520: endodeoxyribonuclease activity1.37E-03
27GO:0071949: FAD binding1.76E-03
28GO:0022857: transmembrane transporter activity2.62E-03
29GO:0003887: DNA-directed DNA polymerase activity3.63E-03
30GO:0008094: DNA-dependent ATPase activity4.44E-03
31GO:0003727: single-stranded RNA binding5.32E-03
32GO:0010181: FMN binding6.56E-03
33GO:0004806: triglyceride lipase activity1.05E-02
34GO:0042803: protein homodimerization activity1.15E-02
35GO:0003697: single-stranded DNA binding1.33E-02
36GO:0004712: protein serine/threonine/tyrosine kinase activity1.41E-02
37GO:0004364: glutathione transferase activity1.55E-02
38GO:0004185: serine-type carboxypeptidase activity1.59E-02
39GO:0051537: 2 iron, 2 sulfur cluster binding1.68E-02
40GO:0003690: double-stranded DNA binding2.01E-02
41GO:0008234: cysteine-type peptidase activity2.11E-02
42GO:0019843: rRNA binding2.96E-02
43GO:0030170: pyridoxal phosphate binding3.19E-02
44GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding3.25E-02
45GO:0015297: antiporter activity3.61E-02
46GO:0003700: transcription factor activity, sequence-specific DNA binding4.38E-02
47GO:0042802: identical protein binding4.42E-02
48GO:0003723: RNA binding4.96E-02
RankGO TermAdjusted P value
1GO:0030427: site of polarized growth0.00E+00
2GO:0005845: mRNA cap binding complex7.07E-05
3GO:0005846: nuclear cap binding complex1.70E-04
4GO:0016605: PML body2.86E-04
5GO:0042646: plastid nucleoid4.15E-04
6GO:0009517: PSII associated light-harvesting complex II5.53E-04
7GO:0000123: histone acetyltransferase complex1.19E-03
8GO:0046930: pore complex1.56E-03
9GO:0042644: chloroplast nucleoid1.76E-03
10GO:0016604: nuclear body1.97E-03
11GO:0030176: integral component of endoplasmic reticulum membrane3.37E-03
12GO:0005875: microtubule associated complex3.63E-03
13GO:0015935: small ribosomal subunit4.44E-03
14GO:0009295: nucleoid8.61E-03
15GO:0019005: SCF ubiquitin ligase complex1.13E-02
16GO:0005819: spindle1.41E-02
17GO:0031966: mitochondrial membrane1.87E-02
18GO:0009507: chloroplast2.74E-02
19GO:0005615: extracellular space4.04E-02
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Gene type



Gene DE type