Gene: AT3G54560
     


Gene description


TAIR ID: AT3G54560

Short description: histone H2A 11

Pathogen responsiveness: -1.39

General responsiveness: -0.36

GO biological process


regulation of DNA methylation, chromatin silencing, flower development, negative regulation of transcription, DNA-templated, defense response to bacterium, response to osmotic stress, regulation of gene expression, detection of temperature stimulus


GO cellular component


nuclear chromatin, nucleus, nucleosome


GO molecular function


protein heterodimerization activity, DNA binding, protein binding


Protein domain


PfamPF16211, C-terminus of histone H2A
PfamPF00125, Core histone H2A/H2B/H3/H4
SMARTSM00414, H2A

Metabolic pathway


Not involved in metabolic pathway


KEGG pathway


Not involved in KEGG pathway


Transcriptional regulation


Regulator:
AT5G56110, AT4G16110

Target:
none

Protein-protein interaction network


The number of partners (degree) is: 2

click to view PPI network

Differentially expressed condition


4 conditions



SeriesControlTreatmentLog2FCAdj. P value
GSE13739Col, WT, control 0 hCol, WT, G.orontii 6 h1.825.37E-06
GSE13739Col, eds, control 0 hCol, eds, G.orontii 6 h1.624.23E-05
GSE17464Laer, JA+Flg22 0 hLaer, JA+Flg22 2 h2.141.54E-03
GSE45212Col, med14, PstDC3000 AvrRpt2 0 hCol, med14, PstDC3000 AvrRpt2 4 h-1.564.54E-07






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