co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G54560

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0051290: protein heterotetramerization	0.00E+00
2	GO:1901671: positive regulation of superoxide dismutase activity	0.00E+00
3	GO:0006216: cytidine catabolic process	0.00E+00
4	GO:0080094: response to trehalose-6-phosphate	0.00E+00
5	GO:0006342: chromatin silencing	5.25E-06
6	GO:0042026: protein refolding	8.63E-06
7	GO:0006458: 'de novo' protein folding	8.63E-06
8	GO:0006169: adenosine salvage	4.45E-05
9	GO:0071158: positive regulation of cell cycle arrest	1.10E-04
10	GO:0007584: response to nutrient	1.10E-04
11	GO:0006269: DNA replication, synthesis of RNA primer	1.10E-04
12	GO:0045717: negative regulation of fatty acid biosynthetic process	1.10E-04
13	GO:0009662: etioplast organization	1.10E-04
14	GO:0061077: chaperone-mediated protein folding	1.30E-04
15	GO:0007005: mitochondrion organization	1.44E-04
16	GO:0035066: positive regulation of histone acetylation	1.89E-04
17	GO:0042276: error-prone translesion synthesis	1.89E-04
18	GO:0070828: heterochromatin organization	1.89E-04
19	GO:0006275: regulation of DNA replication	1.89E-04
20	GO:0051085: chaperone mediated protein folding requiring cofactor	2.78E-04
21	GO:0035067: negative regulation of histone acetylation	2.78E-04
22	GO:0009743: response to carbohydrate	2.78E-04
23	GO:0006986: response to unfolded protein	2.78E-04
24	GO:0044209: AMP salvage	4.75E-04
25	GO:0046855: inositol phosphate dephosphorylation	5.82E-04
26	GO:0042793: transcription from plastid promoter	5.82E-04
27	GO:0009972: cytidine deamination	5.82E-04
28	GO:0006880: intracellular sequestering of iron ion	8.11E-04
29	GO:0006826: iron ion transport	8.11E-04
30	GO:0006400: tRNA modification	8.11E-04
31	GO:0052543: callose deposition in cell wall	9.32E-04
32	GO:0007155: cell adhesion	9.32E-04
33	GO:0000105: histidine biosynthetic process	9.32E-04
34	GO:0006260: DNA replication	9.92E-04
35	GO:0006002: fructose 6-phosphate metabolic process	1.06E-03
36	GO:0048193: Golgi vesicle transport	1.06E-03
37	GO:0044030: regulation of DNA methylation	1.06E-03
38	GO:0009051: pentose-phosphate shunt, oxidative branch	1.19E-03
39	GO:0051555: flavonol biosynthetic process	1.47E-03
40	GO:0046856: phosphatidylinositol dephosphorylation	1.61E-03
41	GO:0006879: cellular iron ion homeostasis	1.61E-03
42	GO:0006006: glucose metabolic process	1.92E-03
43	GO:0009934: regulation of meristem structural organization	2.09E-03
44	GO:0010039: response to iron ion	2.25E-03
45	GO:0006334: nucleosome assembly	2.96E-03
46	GO:0009411: response to UV	3.33E-03
47	GO:0042127: regulation of cell proliferation	3.53E-03
48	GO:0010087: phloem or xylem histogenesis	3.93E-03
49	GO:0009658: chloroplast organization	4.04E-03
50	GO:0010182: sugar mediated signaling pathway	4.14E-03
51	GO:0007059: chromosome segregation	4.35E-03
52	GO:0055072: iron ion homeostasis	4.56E-03
53	GO:0048366: leaf development	4.75E-03
54	GO:0000302: response to reactive oxygen species	4.77E-03
55	GO:0009630: gravitropism	4.99E-03
56	GO:0010583: response to cyclopentenone	4.99E-03
57	GO:0016032: viral process	4.99E-03
58	GO:0010252: auxin homeostasis	5.45E-03
59	GO:0015979: photosynthesis	5.71E-03
60	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	6.39E-03
61	GO:0009637: response to blue light	8.71E-03
62	GO:0046686: response to cadmium ion	8.87E-03
63	GO:0009846: pollen germination	1.22E-02
64	GO:0009909: regulation of flower development	1.38E-02
65	GO:0006096: glycolytic process	1.45E-02
66	GO:0016569: covalent chromatin modification	1.58E-02
67	GO:0006414: translational elongation	1.96E-02
68	GO:0009790: embryo development	2.16E-02
69	GO:0006470: protein dephosphorylation	2.68E-02
70	GO:0010468: regulation of gene expression	2.76E-02
71	GO:0045944: positive regulation of transcription from RNA polymerase II promoter	3.14E-02
72	GO:0080167: response to karrikin	3.87E-02
73	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	3.96E-02
74	GO:0016042: lipid catabolic process	5.00E-02

Rank	GO Term	Adjusted P value
1	GO:0004635: phosphoribosyl-AMP cyclohydrolase activity	0.00E+00
2	GO:0047844: deoxycytidine deaminase activity	0.00E+00
3	GO:0047230: flavonol-3-O-glucoside L-rhamnosyltransferase activity	0.00E+00
4	GO:0004636: phosphoribosyl-ATP diphosphatase activity	0.00E+00
5	GO:0046982: protein heterodimerization activity	1.63E-06
6	GO:0003677: DNA binding	1.94E-05
7	GO:0030337: DNA polymerase processivity factor activity	4.45E-05
8	GO:0004001: adenosine kinase activity	4.45E-05
9	GO:0044183: protein binding involved in protein folding	4.59E-05
10	GO:0003896: DNA primase activity	1.10E-04
11	GO:0004566: beta-glucuronidase activity	1.10E-04
12	GO:0051082: unfolded protein binding	1.28E-04
13	GO:0052659: inositol-1,3,4,5-tetrakisphosphate 5-phosphatase activity	1.89E-04
14	GO:0047334: diphosphate-fructose-6-phosphate 1-phosphotransferase activity	1.89E-04
15	GO:0001872: (1->3)-beta-D-glucan binding	2.78E-04
16	GO:0004322: ferroxidase activity	2.78E-04
17	GO:0004445: inositol-polyphosphate 5-phosphatase activity	2.78E-04
18	GO:0008199: ferric iron binding	2.78E-04
19	GO:0052658: inositol-1,4,5-trisphosphate 5-phosphatase activity	2.78E-04
20	GO:0004345: glucose-6-phosphate dehydrogenase activity	3.73E-04
21	GO:0005507: copper ion binding	5.41E-04
22	GO:0004784: superoxide dismutase activity	5.82E-04
23	GO:0004126: cytidine deaminase activity	6.94E-04
24	GO:0003872: 6-phosphofructokinase activity	8.11E-04
25	GO:0051087: chaperone binding	2.77E-03
26	GO:0003713: transcription coactivator activity	4.14E-03
27	GO:0016722: oxidoreductase activity, oxidizing metal ions	5.68E-03
28	GO:0016798: hydrolase activity, acting on glycosyl bonds	6.89E-03
29	GO:0030247: polysaccharide binding	6.89E-03
30	GO:0003697: single-stranded DNA binding	8.71E-03
31	GO:0050661: NADP binding	9.55E-03
32	GO:0042393: histone binding	9.55E-03
33	GO:0080043: quercetin 3-O-glucosyltransferase activity	1.55E-02
34	GO:0080044: quercetin 7-O-glucosyltransferase activity	1.55E-02
35	GO:0004650: polygalacturonase activity	1.55E-02
36	GO:0016829: lyase activity	2.05E-02
37	GO:0016757: transferase activity, transferring glycosyl groups	2.38E-02
38	GO:0008017: microtubule binding	2.51E-02
39	GO:0008194: UDP-glycosyltransferase activity	2.63E-02
40	GO:0016788: hydrolase activity, acting on ester bonds	3.36E-02
41	GO:0003682: chromatin binding	3.45E-02
42	GO:0052689: carboxylic ester hydrolase activity	4.15E-02
43	GO:0042803: protein homodimerization activity	4.55E-02
44	GO:0004722: protein serine/threonine phosphatase activity	4.69E-02

Rank	GO Term	Adjusted P value
1	GO:0000940: condensed chromosome outer kinetochore	0.00E+00
2	GO:0000788: nuclear nucleosome	0.00E+00
3	GO:0005721: pericentric heterochromatin	0.00E+00
4	GO:0000786: nucleosome	9.60E-11
5	GO:0000790: nuclear chromatin	4.01E-06
6	GO:0042644: chloroplast nucleoid	2.58E-05
7	GO:0031436: BRCA1-BARD1 complex	4.45E-05
8	GO:0010318: pyrophosphate-dependent phosphofructokinase complex, beta-subunit complex	4.45E-05
9	GO:0005730: nucleolus	5.88E-05
10	GO:0000792: heterochromatin	1.10E-04
11	GO:0009941: chloroplast envelope	1.18E-04
12	GO:0070531: BRCA1-A complex	1.89E-04
13	GO:0005658: alpha DNA polymerase:primase complex	1.89E-04
14	GO:0022626: cytosolic ribosome	2.90E-04
15	GO:0009295: nucleoid	3.55E-04
16	GO:0009579: thylakoid	4.14E-04
17	GO:0009570: chloroplast stroma	1.12E-03
18	GO:0005876: spindle microtubule	1.32E-03
19	GO:0005765: lysosomal membrane	1.61E-03
20	GO:0046658: anchored component of plasma membrane	3.47E-03
21	GO:0048046: apoplast	6.45E-03
22	GO:0009505: plant-type cell wall	6.73E-03
23	GO:0009507: chloroplast	1.18E-02
24	GO:0009506: plasmodesma	1.45E-02
25	GO:0031225: anchored component of membrane	2.05E-02
26	GO:0005759: mitochondrial matrix	2.27E-02
27	GO:0005622: intracellular	2.34E-02
28	GO:0005634: nucleus	2.64E-02
29	GO:0005840: ribosome	2.79E-02
30	GO:0005618: cell wall	2.88E-02
31	GO:0009536: plastid	3.27E-02
32	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	3.55E-02