Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G54560

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0006226: dUMP biosynthetic process0.00E+00
2GO:0051290: protein heterotetramerization0.00E+00
3GO:0046080: dUTP metabolic process0.00E+00
4GO:1901671: positive regulation of superoxide dismutase activity0.00E+00
5GO:0031508: pericentric heterochromatin assembly0.00E+00
6GO:0006216: cytidine catabolic process0.00E+00
7GO:0009394: 2'-deoxyribonucleotide metabolic process0.00E+00
8GO:0010424: DNA methylation on cytosine within a CG sequence1.35E-08
9GO:0010216: maintenance of DNA methylation6.19E-06
10GO:0048438: floral whorl development1.21E-05
11GO:0045717: negative regulation of fatty acid biosynthetic process3.21E-05
12GO:0010220: positive regulation of vernalization response3.21E-05
13GO:0071158: positive regulation of cell cycle arrest3.21E-05
14GO:0010069: zygote asymmetric cytokinesis in embryo sac3.21E-05
15GO:0090309: positive regulation of methylation-dependent chromatin silencing3.21E-05
16GO:0006342: chromatin silencing3.64E-05
17GO:0006275: regulation of DNA replication5.78E-05
18GO:0032776: DNA methylation on cytosine5.78E-05
19GO:0035066: positive regulation of histone acetylation5.78E-05
20GO:0042276: error-prone translesion synthesis5.78E-05
21GO:0070828: heterochromatin organization5.78E-05
22GO:0006986: response to unfolded protein8.79E-05
23GO:0051085: chaperone mediated protein folding requiring cofactor8.79E-05
24GO:0035067: negative regulation of histone acetylation8.79E-05
25GO:0009972: cytidine deamination1.98E-04
26GO:0000060: protein import into nucleus, translocation1.98E-04
27GO:0010076: maintenance of floral meristem identity2.39E-04
28GO:0010077: maintenance of inflorescence meristem identity2.39E-04
29GO:0016569: covalent chromatin modification3.04E-04
30GO:0044030: regulation of DNA methylation3.73E-04
31GO:0006349: regulation of gene expression by genetic imprinting4.69E-04
32GO:0006325: chromatin organization5.20E-04
33GO:0010582: floral meristem determinacy6.23E-04
34GO:0009934: regulation of meristem structural organization7.31E-04
35GO:0045944: positive regulation of transcription from RNA polymerase II promoter7.78E-04
36GO:0006334: nucleosome assembly1.02E-03
37GO:0009294: DNA mediated transformation1.14E-03
38GO:0009411: response to UV1.14E-03
39GO:0042127: regulation of cell proliferation1.21E-03
40GO:0019722: calcium-mediated signaling1.21E-03
41GO:0006281: DNA repair1.48E-03
42GO:0048510: regulation of timing of transition from vegetative to reproductive phase1.61E-03
43GO:0007267: cell-cell signaling1.91E-03
44GO:0009788: negative regulation of abscisic acid-activated signaling pathway2.14E-03
45GO:0009910: negative regulation of flower development2.71E-03
46GO:0006260: DNA replication3.90E-03
47GO:0000165: MAPK cascade3.90E-03
48GO:0009909: regulation of flower development4.50E-03
49GO:0009739: response to gibberellin8.43E-03
50GO:0010468: regulation of gene expression8.82E-03
51GO:0048366: leaf development1.19E-02
52GO:0009416: response to light stimulus2.44E-02
53GO:0051301: cell division2.60E-02
54GO:0045893: positive regulation of transcription, DNA-templated2.69E-02
55GO:0009414: response to water deprivation3.97E-02
56GO:0030154: cell differentiation4.29E-02
RankGO TermAdjusted P value
1GO:0047844: deoxycytidine deaminase activity0.00E+00
2GO:0004170: dUTP diphosphatase activity0.00E+00
3GO:0003677: DNA binding1.44E-10
4GO:0046982: protein heterodimerization activity1.78E-08
5GO:0030337: DNA polymerase processivity factor activity1.21E-05
6GO:0003682: chromatin binding5.23E-05
7GO:0010429: methyl-CpNpN binding5.78E-05
8GO:0010428: methyl-CpNpG binding5.78E-05
9GO:0010385: double-stranded methylated DNA binding1.22E-04
10GO:0042393: histone binding1.45E-04
11GO:0004784: superoxide dismutase activity1.98E-04
12GO:0004126: cytidine deaminase activity2.39E-04
13GO:0003886: DNA (cytosine-5-)-methyltransferase activity2.39E-04
14GO:0008327: methyl-CpG binding5.71E-04
15GO:0051087: chaperone binding9.61E-04
16GO:0042803: protein homodimerization activity1.27E-03
17GO:0004871: signal transducer activity1.27E-03
18GO:0003713: transcription coactivator activity1.40E-03
19GO:0005515: protein binding3.07E-03
20GO:0051082: unfolded protein binding5.34E-03
21GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding6.82E-03
22GO:0004842: ubiquitin-protein transferase activity7.20E-03
23GO:0042802: identical protein binding9.21E-03
24GO:0008168: methyltransferase activity1.03E-02
25GO:0000287: magnesium ion binding1.04E-02
26GO:0061630: ubiquitin protein ligase activity1.28E-02
27GO:0005507: copper ion binding3.14E-02
28GO:0005516: calmodulin binding3.27E-02
RankGO TermAdjusted P value
1GO:0000788: nuclear nucleosome0.00E+00
2GO:0005721: pericentric heterochromatin0.00E+00
3GO:0000786: nucleosome8.51E-11
4GO:0031436: BRCA1-BARD1 complex1.21E-05
5GO:0000790: nuclear chromatin3.02E-05
6GO:0000792: heterochromatin3.21E-05
7GO:0070531: BRCA1-A complex5.78E-05
8GO:0005634: nucleus1.41E-04
9GO:0005730: nucleolus1.51E-04
10GO:0010369: chromocenter2.39E-04
11GO:0009579: thylakoid3.31E-04
12GO:0005720: nuclear heterochromatin4.21E-04
13GO:0042644: chloroplast nucleoid4.21E-04
14GO:0009295: nucleoid1.91E-03
15GO:0009536: plastid6.39E-03
16GO:0005759: mitochondrial matrix7.30E-03
17GO:0048046: apoplast1.90E-02
18GO:0009941: chloroplast envelope2.46E-02
19GO:0009534: chloroplast thylakoid2.79E-02
20GO:0005622: intracellular3.68E-02
21GO:0009505: plant-type cell wall4.74E-02
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Gene type



Gene DE type