gene detail

Gene description

TAIR ID: AT3G48780

Short description: serine palmitoyltransferase 1

Pathogen responsiveness: NA

General responsiveness: NA

Orthologous

Rice: No orthologous gene

Maize: No orthologous gene

Wheat: No orthologous gene

GO biological process

sphingolipid biosynthetic process, pollen development, photomorphogenesis

GO cellular component

endoplasmic reticulum membrane, chloroplast, integral component of membrane

GO molecular function

serine C-palmitoyltransferase activity, pyridoxal phosphate binding

Protein domain

Pfam	PF00155, Aminotransferase class I and II

Metabolic pathway

PWY-5129: sphingolipid biosynthesis (plants)

KEGG pathway

PATH:ath00600: Sphingolipid metabolism

Transcriptional regulation

Regulator:
AT1G24260, AT5G61850

Target:
none

Protein-protein interaction network

No Interactor

Coexpression network

Differentially expressed condition

11 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 12 h	1.79	1.18E-04
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 12 h	2.14	1.65E-05
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 4 h	2.64	1.26E-06
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 8 h	1.94	4.66E-05
GSE45214	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 4 h	1.61	3.66E-11
GSE45214	Col, med16, PstDC3000 AvrRpt2 0 h	Col, med16, PstDC3000 AvrRpt2 4 h	1.93	1.04E-12
GSE56094	Col, WT, control 10 h	Col, WT, PstDC3000 10 h	1.91	4.44E-16
GSE56094	Col, WT, control 11 h	Col, WT, PstDC3000 11 h	2.02	9.29E-17
GSE56094	Col, WT, control 12 h	Col, WT, PstDC3000 12 h	1.68	4.46E-13
GSE56094	Col, WT, control 13 h	Col, WT, PstDC3000 13 h	1.93	3.75E-16
GSE56094	Col, WT, control 8 h	Col, WT, PstDC3000 8 h	1.70	4.39E-13