gene detail

Gene description

TAIR ID: AT3G46610

Short description: Pentatricopeptide repeat (PPR-like) superfamily protein

Pathogen responsiveness: -0.95

General responsiveness: 0.68

Orthologous

Rice: No orthologous gene

Maize:

GRMZM2G056116

Wheat:

TA.8270.1.A1_AT

GO biological process

RNA modification

GO cellular component

mitochondrion, intracellular membrane-bounded organelle

GO molecular function

RNA binding, endonuclease activity

Protein domain

Pfam	PF01535, PPR repeat
Pfam	PF13812, Pentatricopeptide repeat domain
Pfam	PF13041, PPR repeat family

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

Not involved in KEGG pathway

Transcriptional regulation

Regulator:
AT4G36990

Target:
none

Protein-protein interaction network

No Interactor

Coexpression network

GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE56094_WT_HRPA-  view
GSE13739_WT_GO  view
GSE5686_WT_GO  view
GSE45212_MED14_PSTDC3000_AVRRPT2  view
GSE26679_EDR1_GC  view

Differentially expressed condition

7 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE17464	Penta, control	Penta, Flg22 2 h	-1.54	2.69E-06
GSE17464	Penta, control	Penta, Flg22 2 h	-1.86	3.50E-07
GSE37269	St0, WT, control	St0, WT, TEV 21 d	-1.60	1.34E-02
GSE50526	Col, WT, mock 9 h	Col, WT, A. brassicicola 9 h	-1.71	3.34E-02
GSE5520	Col, WT, control 10 h	Col, WT, Cor- 10 h	-1.90	5.30E-04
GSE5520	Col, WT, control 7 h	Col, WT, PstDC3000 7 h	-1.61	4.21E-04
GSE58954	Col, WT, Psm AvrRpt2 0 h	Col, WT, Psm AvrRpt2 6 h	-1.75	5.24E-03