GO Enrichment Analysis of Co-expressed Genes with
AT3G46610
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0000372: Group I intron splicing | 0.00E+00 |
| 2 | GO:0043972: histone H3-K23 acetylation | 0.00E+00 |
| 3 | GO:0046486: glycerolipid metabolic process | 0.00E+00 |
| 4 | GO:0044154: histone H3-K14 acetylation | 0.00E+00 |
| 5 | GO:2000023: regulation of lateral root development | 0.00E+00 |
| 6 | GO:0006436: tryptophanyl-tRNA aminoacylation | 8.25E-05 |
| 7 | GO:0051171: regulation of nitrogen compound metabolic process | 8.25E-05 |
| 8 | GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic | 8.25E-05 |
| 9 | GO:0043971: histone H3-K18 acetylation | 8.25E-05 |
| 10 | GO:0006650: glycerophospholipid metabolic process | 1.97E-04 |
| 11 | GO:0042780: tRNA 3'-end processing | 3.29E-04 |
| 12 | GO:0045493: xylan catabolic process | 3.29E-04 |
| 13 | GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic | 3.29E-04 |
| 14 | GO:0031022: nuclear migration along microfilament | 3.29E-04 |
| 15 | GO:0046168: glycerol-3-phosphate catabolic process | 3.29E-04 |
| 16 | GO:0009800: cinnamic acid biosynthetic process | 4.75E-04 |
| 17 | GO:0010255: glucose mediated signaling pathway | 4.75E-04 |
| 18 | GO:0045017: glycerolipid biosynthetic process | 4.75E-04 |
| 19 | GO:0009102: biotin biosynthetic process | 4.75E-04 |
| 20 | GO:0006072: glycerol-3-phosphate metabolic process | 4.75E-04 |
| 21 | GO:0007018: microtubule-based movement | 5.32E-04 |
| 22 | GO:0006021: inositol biosynthetic process | 6.32E-04 |
| 23 | GO:0009793: embryo development ending in seed dormancy | 7.40E-04 |
| 24 | GO:0009451: RNA modification | 7.88E-04 |
| 25 | GO:0009904: chloroplast accumulation movement | 8.00E-04 |
| 26 | GO:0006559: L-phenylalanine catabolic process | 9.77E-04 |
| 27 | GO:0009903: chloroplast avoidance movement | 1.16E-03 |
| 28 | GO:0009610: response to symbiotic fungus | 1.36E-03 |
| 29 | GO:0000105: histidine biosynthetic process | 1.57E-03 |
| 30 | GO:0006353: DNA-templated transcription, termination | 1.57E-03 |
| 31 | GO:0032544: plastid translation | 1.79E-03 |
| 32 | GO:0044030: regulation of DNA methylation | 1.79E-03 |
| 33 | GO:0046916: cellular transition metal ion homeostasis | 2.02E-03 |
| 34 | GO:0000373: Group II intron splicing | 2.02E-03 |
| 35 | GO:0010380: regulation of chlorophyll biosynthetic process | 2.26E-03 |
| 36 | GO:0006790: sulfur compound metabolic process | 3.03E-03 |
| 37 | GO:0046854: phosphatidylinositol phosphorylation | 3.88E-03 |
| 38 | GO:0080188: RNA-directed DNA methylation | 3.88E-03 |
| 39 | GO:0006289: nucleotide-excision repair | 4.48E-03 |
| 40 | GO:0006338: chromatin remodeling | 4.48E-03 |
| 41 | GO:0010187: negative regulation of seed germination | 4.48E-03 |
| 42 | GO:0010073: meristem maintenance | 4.80E-03 |
| 43 | GO:0006418: tRNA aminoacylation for protein translation | 4.80E-03 |
| 44 | GO:0015992: proton transport | 5.12E-03 |
| 45 | GO:0006633: fatty acid biosynthetic process | 5.32E-03 |
| 46 | GO:0016226: iron-sulfur cluster assembly | 5.45E-03 |
| 47 | GO:0048868: pollen tube development | 7.20E-03 |
| 48 | GO:0008654: phospholipid biosynthetic process | 7.95E-03 |
| 49 | GO:0009788: negative regulation of abscisic acid-activated signaling pathway | 1.12E-02 |
| 50 | GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway | 1.16E-02 |
| 51 | GO:0009627: systemic acquired resistance | 1.17E-02 |
| 52 | GO:0010411: xyloglucan metabolic process | 1.21E-02 |
| 53 | GO:0048481: plant ovule development | 1.30E-02 |
| 54 | GO:0009910: negative regulation of flower development | 1.44E-02 |
| 55 | GO:0030001: metal ion transport | 1.69E-02 |
| 56 | GO:0006839: mitochondrial transport | 1.69E-02 |
| 57 | GO:0008283: cell proliferation | 1.84E-02 |
| 58 | GO:0051707: response to other organism | 1.84E-02 |
| 59 | GO:0009736: cytokinin-activated signaling pathway | 2.28E-02 |
| 60 | GO:0006364: rRNA processing | 2.28E-02 |
| 61 | GO:0009740: gibberellic acid mediated signaling pathway | 2.80E-02 |
| 62 | GO:0016569: covalent chromatin modification | 2.80E-02 |
| 63 | GO:0009553: embryo sac development | 2.86E-02 |
| 64 | GO:0009416: response to light stimulus | 2.95E-02 |
| 65 | GO:0009058: biosynthetic process | 3.56E-02 |
| 66 | GO:0042744: hydrogen peroxide catabolic process | 3.76E-02 |
| 67 | GO:0009790: embryo development | 3.83E-02 |
| 68 | GO:0040008: regulation of growth | 4.18E-02 |
| 69 | GO:0007623: circadian rhythm | 4.32E-02 |
| 70 | GO:0009739: response to gibberellin | 4.67E-02 |
| 71 | GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process | 4.67E-02 |
| 72 | GO:0010468: regulation of gene expression | 4.89E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0061634: alpha-D-xyloside xylohydrolase | 0.00E+00 |
| 2 | GO:0008710: 8-amino-7-oxononanoate synthase activity | 0.00E+00 |
| 3 | GO:0080176: xyloglucan 1,6-alpha-xylosidase activity | 0.00E+00 |
| 4 | GO:0052834: inositol monophosphate phosphatase activity | 0.00E+00 |
| 5 | GO:0004401: histidinol-phosphatase activity | 0.00E+00 |
| 6 | GO:0033818: beta-ketoacyl-acyl-carrier-protein synthase III activity | 0.00E+00 |
| 7 | GO:0004830: tryptophan-tRNA ligase activity | 8.25E-05 |
| 8 | GO:0010347: L-galactose-1-phosphate phosphatase activity | 8.25E-05 |
| 9 | GO:0004047: aminomethyltransferase activity | 1.97E-04 |
| 10 | GO:0052832: inositol monophosphate 3-phosphatase activity | 1.97E-04 |
| 11 | GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity | 1.97E-04 |
| 12 | GO:0008934: inositol monophosphate 1-phosphatase activity | 1.97E-04 |
| 13 | GO:0052833: inositol monophosphate 4-phosphatase activity | 1.97E-04 |
| 14 | GO:0031418: L-ascorbic acid binding | 2.48E-04 |
| 15 | GO:0016805: dipeptidase activity | 3.29E-04 |
| 16 | GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity | 3.29E-04 |
| 17 | GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity | 3.29E-04 |
| 18 | GO:0045548: phenylalanine ammonia-lyase activity | 3.29E-04 |
| 19 | GO:0042781: 3'-tRNA processing endoribonuclease activity | 3.29E-04 |
| 20 | GO:0009678: hydrogen-translocating pyrophosphatase activity | 4.75E-04 |
| 21 | GO:0070628: proteasome binding | 6.32E-04 |
| 22 | GO:0009044: xylan 1,4-beta-xylosidase activity | 6.32E-04 |
| 23 | GO:0046556: alpha-L-arabinofuranosidase activity | 6.32E-04 |
| 24 | GO:0010385: double-stranded methylated DNA binding | 6.32E-04 |
| 25 | GO:0008237: metallopeptidase activity | 7.76E-04 |
| 26 | GO:0070696: transmembrane receptor protein serine/threonine kinase binding | 8.00E-04 |
| 27 | GO:0016887: ATPase activity | 8.88E-04 |
| 28 | GO:0031593: polyubiquitin binding | 9.77E-04 |
| 29 | GO:0004656: procollagen-proline 4-dioxygenase activity | 1.16E-03 |
| 30 | GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity | 1.16E-03 |
| 31 | GO:0004427: inorganic diphosphatase activity | 1.36E-03 |
| 32 | GO:0046914: transition metal ion binding | 1.79E-03 |
| 33 | GO:0003678: DNA helicase activity | 2.02E-03 |
| 34 | GO:0003777: microtubule motor activity | 2.66E-03 |
| 35 | GO:0004519: endonuclease activity | 3.12E-03 |
| 36 | GO:0102337: 3-oxo-cerotoyl-CoA synthase activity | 4.18E-03 |
| 37 | GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity | 4.18E-03 |
| 38 | GO:0102336: 3-oxo-arachidoyl-CoA synthase activity | 4.18E-03 |
| 39 | GO:0019843: rRNA binding | 4.25E-03 |
| 40 | GO:0043130: ubiquitin binding | 4.48E-03 |
| 41 | GO:0004176: ATP-dependent peptidase activity | 5.12E-03 |
| 42 | GO:0004812: aminoacyl-tRNA ligase activity | 6.48E-03 |
| 43 | GO:0004402: histone acetyltransferase activity | 6.83E-03 |
| 44 | GO:0008536: Ran GTPase binding | 7.20E-03 |
| 45 | GO:0001085: RNA polymerase II transcription factor binding | 7.20E-03 |
| 46 | GO:0010181: FMN binding | 7.57E-03 |
| 47 | GO:0003684: damaged DNA binding | 9.53E-03 |
| 48 | GO:0003682: chromatin binding | 9.57E-03 |
| 49 | GO:0008483: transaminase activity | 9.94E-03 |
| 50 | GO:0004806: triglyceride lipase activity | 1.21E-02 |
| 51 | GO:0004222: metalloendopeptidase activity | 1.39E-02 |
| 52 | GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | 1.44E-02 |
| 53 | GO:0003824: catalytic activity | 1.60E-02 |
| 54 | GO:0042393: histone binding | 1.69E-02 |
| 55 | GO:0051287: NAD binding | 2.11E-02 |
| 56 | GO:0004672: protein kinase activity | 2.31E-02 |
| 57 | GO:0003723: RNA binding | 2.40E-02 |
| 58 | GO:0004386: helicase activity | 3.11E-02 |
| 59 | GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | 3.50E-02 |
| 60 | GO:0030170: pyridoxal phosphate binding | 3.70E-02 |
| 61 | GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding | 3.76E-02 |
| 62 | GO:0030246: carbohydrate binding | 3.96E-02 |
| 63 | GO:0005524: ATP binding | 4.38E-02 |
| 64 | GO:0008017: microtubule binding | 4.46E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0005871: kinesin complex | 4.26E-04 |
| 2 | GO:0009331: glycerol-3-phosphate dehydrogenase complex | 4.75E-04 |
| 3 | GO:0009507: chloroplast | 6.15E-04 |
| 4 | GO:0016602: CCAAT-binding factor complex | 3.31E-03 |
| 5 | GO:0009532: plastid stroma | 5.12E-03 |
| 6 | GO:0009941: chloroplast envelope | 1.01E-02 |
| 7 | GO:0030529: intracellular ribonucleoprotein complex | 1.08E-02 |
| 8 | GO:0005667: transcription factor complex | 1.17E-02 |
| 9 | GO:0009707: chloroplast outer membrane | 1.30E-02 |
| 10 | GO:0009570: chloroplast stroma | 1.79E-02 |
| 11 | GO:0009505: plant-type cell wall | 1.89E-02 |
| 12 | GO:0005856: cytoskeleton | 2.00E-02 |
| 13 | GO:0009506: plasmodesma | 2.22E-02 |
| 14 | GO:0005886: plasma membrane | 2.96E-02 |
| 15 | GO:0005623: cell | 3.50E-02 |