GO Enrichment Analysis of Co-expressed Genes with
AT3G46610
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0042821: pyridoxal biosynthetic process | 0.00E+00 |
| 2 | GO:0018023: peptidyl-lysine trimethylation | 0.00E+00 |
| 3 | GO:0006223: uracil salvage | 0.00E+00 |
| 4 | GO:0042820: vitamin B6 catabolic process | 0.00E+00 |
| 5 | GO:0006399: tRNA metabolic process | 0.00E+00 |
| 6 | GO:0002184: cytoplasmic translational termination | 0.00E+00 |
| 7 | GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate | 0.00E+00 |
| 8 | GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation | 0.00E+00 |
| 9 | GO:0006412: translation | 1.04E-06 |
| 10 | GO:0032544: plastid translation | 2.94E-06 |
| 11 | GO:0009658: chloroplast organization | 1.35E-05 |
| 12 | GO:0042254: ribosome biogenesis | 1.42E-05 |
| 13 | GO:0009735: response to cytokinin | 3.14E-05 |
| 14 | GO:0006655: phosphatidylglycerol biosynthetic process | 5.54E-05 |
| 15 | GO:0016117: carotenoid biosynthetic process | 7.75E-05 |
| 16 | GO:0048564: photosystem I assembly | 1.32E-04 |
| 17 | GO:0009443: pyridoxal 5'-phosphate salvage | 1.73E-04 |
| 18 | GO:1904966: positive regulation of vitamin E biosynthetic process | 1.73E-04 |
| 19 | GO:1904964: positive regulation of phytol biosynthetic process | 1.73E-04 |
| 20 | GO:0042371: vitamin K biosynthetic process | 1.73E-04 |
| 21 | GO:0034337: RNA folding | 1.73E-04 |
| 22 | GO:0010729: positive regulation of hydrogen peroxide biosynthetic process | 1.73E-04 |
| 23 | GO:0010206: photosystem II repair | 2.02E-04 |
| 24 | GO:0010027: thylakoid membrane organization | 2.25E-04 |
| 25 | GO:0015995: chlorophyll biosynthetic process | 2.81E-04 |
| 26 | GO:0016024: CDP-diacylglycerol biosynthetic process | 3.80E-04 |
| 27 | GO:0006633: fatty acid biosynthetic process | 3.80E-04 |
| 28 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 3.92E-04 |
| 29 | GO:0018026: peptidyl-lysine monomethylation | 3.92E-04 |
| 30 | GO:0010275: NAD(P)H dehydrogenase complex assembly | 3.92E-04 |
| 31 | GO:0010207: photosystem II assembly | 4.87E-04 |
| 32 | GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition | 6.40E-04 |
| 33 | GO:0090391: granum assembly | 6.40E-04 |
| 34 | GO:0006518: peptide metabolic process | 6.40E-04 |
| 35 | GO:0045493: xylan catabolic process | 6.40E-04 |
| 36 | GO:0019344: cysteine biosynthetic process | 6.71E-04 |
| 37 | GO:0009052: pentose-phosphate shunt, non-oxidative branch | 9.13E-04 |
| 38 | GO:0016556: mRNA modification | 9.13E-04 |
| 39 | GO:0010731: protein glutathionylation | 9.13E-04 |
| 40 | GO:0006424: glutamyl-tRNA aminoacylation | 9.13E-04 |
| 41 | GO:2001141: regulation of RNA biosynthetic process | 9.13E-04 |
| 42 | GO:0009152: purine ribonucleotide biosynthetic process | 9.13E-04 |
| 43 | GO:0046653: tetrahydrofolate metabolic process | 9.13E-04 |
| 44 | GO:0044206: UMP salvage | 1.21E-03 |
| 45 | GO:2000122: negative regulation of stomatal complex development | 1.21E-03 |
| 46 | GO:0000413: protein peptidyl-prolyl isomerization | 1.21E-03 |
| 47 | GO:0010037: response to carbon dioxide | 1.21E-03 |
| 48 | GO:0015976: carbon utilization | 1.21E-03 |
| 49 | GO:0009765: photosynthesis, light harvesting | 1.21E-03 |
| 50 | GO:0015979: photosynthesis | 1.44E-03 |
| 51 | GO:0016120: carotene biosynthetic process | 1.54E-03 |
| 52 | GO:0043097: pyrimidine nucleoside salvage | 1.54E-03 |
| 53 | GO:0032543: mitochondrial translation | 1.54E-03 |
| 54 | GO:0010236: plastoquinone biosynthetic process | 1.54E-03 |
| 55 | GO:0045038: protein import into chloroplast thylakoid membrane | 1.54E-03 |
| 56 | GO:0016123: xanthophyll biosynthetic process | 1.54E-03 |
| 57 | GO:0006206: pyrimidine nucleobase metabolic process | 1.89E-03 |
| 58 | GO:0032973: amino acid export | 1.89E-03 |
| 59 | GO:0010190: cytochrome b6f complex assembly | 1.89E-03 |
| 60 | GO:0016554: cytidine to uridine editing | 1.89E-03 |
| 61 | GO:1901259: chloroplast rRNA processing | 2.27E-03 |
| 62 | GO:0042372: phylloquinone biosynthetic process | 2.27E-03 |
| 63 | GO:0010555: response to mannitol | 2.27E-03 |
| 64 | GO:0006614: SRP-dependent cotranslational protein targeting to membrane | 2.67E-03 |
| 65 | GO:0010196: nonphotochemical quenching | 2.67E-03 |
| 66 | GO:0006821: chloride transport | 2.67E-03 |
| 67 | GO:0006400: tRNA modification | 2.67E-03 |
| 68 | GO:0009772: photosynthetic electron transport in photosystem II | 2.67E-03 |
| 69 | GO:0043090: amino acid import | 2.67E-03 |
| 70 | GO:0010411: xyloglucan metabolic process | 2.70E-03 |
| 71 | GO:0009817: defense response to fungus, incompatible interaction | 2.99E-03 |
| 72 | GO:0018298: protein-chromophore linkage | 2.99E-03 |
| 73 | GO:0009642: response to light intensity | 3.09E-03 |
| 74 | GO:0045292: mRNA cis splicing, via spliceosome | 3.09E-03 |
| 75 | GO:0006526: arginine biosynthetic process | 3.54E-03 |
| 76 | GO:0017004: cytochrome complex assembly | 3.54E-03 |
| 77 | GO:0071482: cellular response to light stimulus | 3.54E-03 |
| 78 | GO:0009637: response to blue light | 3.78E-03 |
| 79 | GO:0080144: amino acid homeostasis | 4.00E-03 |
| 80 | GO:0006783: heme biosynthetic process | 4.00E-03 |
| 81 | GO:0000373: Group II intron splicing | 4.00E-03 |
| 82 | GO:1900865: chloroplast RNA modification | 4.49E-03 |
| 83 | GO:0010114: response to red light | 4.86E-03 |
| 84 | GO:0006782: protoporphyrinogen IX biosynthetic process | 4.99E-03 |
| 85 | GO:0019538: protein metabolic process | 4.99E-03 |
| 86 | GO:0006535: cysteine biosynthetic process from serine | 4.99E-03 |
| 87 | GO:0043069: negative regulation of programmed cell death | 4.99E-03 |
| 88 | GO:0009773: photosynthetic electron transport in photosystem I | 5.52E-03 |
| 89 | GO:0006415: translational termination | 5.52E-03 |
| 90 | GO:0006352: DNA-templated transcription, initiation | 5.52E-03 |
| 91 | GO:0000038: very long-chain fatty acid metabolic process | 5.52E-03 |
| 92 | GO:0010628: positive regulation of gene expression | 6.61E-03 |
| 93 | GO:0010020: chloroplast fission | 7.20E-03 |
| 94 | GO:0010167: response to nitrate | 7.79E-03 |
| 95 | GO:0000027: ribosomal large subunit assembly | 9.03E-03 |
| 96 | GO:0009116: nucleoside metabolic process | 9.03E-03 |
| 97 | GO:0009768: photosynthesis, light harvesting in photosystem I | 9.69E-03 |
| 98 | GO:0061077: chaperone-mediated protein folding | 1.03E-02 |
| 99 | GO:0016226: iron-sulfur cluster assembly | 1.10E-02 |
| 100 | GO:0006012: galactose metabolic process | 1.17E-02 |
| 101 | GO:0009790: embryo development | 1.37E-02 |
| 102 | GO:0042335: cuticle development | 1.39E-02 |
| 103 | GO:0006520: cellular amino acid metabolic process | 1.47E-02 |
| 104 | GO:0008654: phospholipid biosynthetic process | 1.62E-02 |
| 105 | GO:0009451: RNA modification | 1.66E-02 |
| 106 | GO:0002229: defense response to oomycetes | 1.70E-02 |
| 107 | GO:0000302: response to reactive oxygen species | 1.70E-02 |
| 108 | GO:0009793: embryo development ending in seed dormancy | 1.74E-02 |
| 109 | GO:0032502: developmental process | 1.78E-02 |
| 110 | GO:0030163: protein catabolic process | 1.87E-02 |
| 111 | GO:0009567: double fertilization forming a zygote and endosperm | 1.95E-02 |
| 112 | GO:0009627: systemic acquired resistance | 2.39E-02 |
| 113 | GO:0042128: nitrate assimilation | 2.39E-02 |
| 114 | GO:0016311: dephosphorylation | 2.58E-02 |
| 115 | GO:0006508: proteolysis | 2.81E-02 |
| 116 | GO:0046686: response to cadmium ion | 2.86E-02 |
| 117 | GO:0010218: response to far red light | 2.87E-02 |
| 118 | GO:0006457: protein folding | 2.91E-02 |
| 119 | GO:0010119: regulation of stomatal movement | 2.96E-02 |
| 120 | GO:0009853: photorespiration | 3.16E-02 |
| 121 | GO:0034599: cellular response to oxidative stress | 3.27E-02 |
| 122 | GO:0030001: metal ion transport | 3.47E-02 |
| 123 | GO:0006631: fatty acid metabolic process | 3.58E-02 |
| 124 | GO:0042546: cell wall biogenesis | 3.90E-02 |
| 125 | GO:0006486: protein glycosylation | 4.68E-02 |
| 126 | GO:0055114: oxidation-reduction process | 4.88E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity | 0.00E+00 |
| 2 | GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity | 0.00E+00 |
| 3 | GO:0045435: lycopene epsilon cyclase activity | 0.00E+00 |
| 4 | GO:0061634: alpha-D-xyloside xylohydrolase | 0.00E+00 |
| 5 | GO:0048307: ferredoxin-nitrite reductase activity | 0.00E+00 |
| 6 | GO:0080176: xyloglucan 1,6-alpha-xylosidase activity | 0.00E+00 |
| 7 | GO:0050421: nitrite reductase (NO-forming) activity | 0.00E+00 |
| 8 | GO:0005048: signal sequence binding | 0.00E+00 |
| 9 | GO:0047889: ferredoxin-nitrate reductase activity | 0.00E+00 |
| 10 | GO:0009974: zeinoxanthin epsilon hydroxylase activity | 0.00E+00 |
| 11 | GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity | 0.00E+00 |
| 12 | GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity | 0.00E+00 |
| 13 | GO:0050236: pyridoxine:NADP 4-dehydrogenase activity | 0.00E+00 |
| 14 | GO:0019843: rRNA binding | 1.97E-12 |
| 15 | GO:0003735: structural constituent of ribosome | 2.78E-07 |
| 16 | GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity | 1.45E-06 |
| 17 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 4.16E-06 |
| 18 | GO:0004033: aldo-keto reductase (NADP) activity | 1.32E-04 |
| 19 | GO:0004853: uroporphyrinogen decarboxylase activity | 1.73E-04 |
| 20 | GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity | 1.73E-04 |
| 21 | GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity | 1.73E-04 |
| 22 | GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity | 1.73E-04 |
| 23 | GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity | 1.73E-04 |
| 24 | GO:0080132: fatty acid alpha-hydroxylase activity | 1.73E-04 |
| 25 | GO:0004148: dihydrolipoyl dehydrogenase activity | 6.40E-04 |
| 26 | GO:0004751: ribose-5-phosphate isomerase activity | 6.40E-04 |
| 27 | GO:0045174: glutathione dehydrogenase (ascorbate) activity | 6.40E-04 |
| 28 | GO:0016742: hydroxymethyl-, formyl- and related transferase activity | 6.40E-04 |
| 29 | GO:0070402: NADPH binding | 6.40E-04 |
| 30 | GO:0008864: formyltetrahydrofolate deformylase activity | 6.40E-04 |
| 31 | GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor | 6.40E-04 |
| 32 | GO:0005528: FK506 binding | 6.71E-04 |
| 33 | GO:0016851: magnesium chelatase activity | 9.13E-04 |
| 34 | GO:0016149: translation release factor activity, codon specific | 9.13E-04 |
| 35 | GO:0043023: ribosomal large subunit binding | 9.13E-04 |
| 36 | GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity | 9.13E-04 |
| 37 | GO:0052793: pectin acetylesterase activity | 1.21E-03 |
| 38 | GO:0043495: protein anchor | 1.21E-03 |
| 39 | GO:0009044: xylan 1,4-beta-xylosidase activity | 1.21E-03 |
| 40 | GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity | 1.21E-03 |
| 41 | GO:0046556: alpha-L-arabinofuranosidase activity | 1.21E-03 |
| 42 | GO:0004659: prenyltransferase activity | 1.21E-03 |
| 43 | GO:0016279: protein-lysine N-methyltransferase activity | 1.21E-03 |
| 44 | GO:0001053: plastid sigma factor activity | 1.21E-03 |
| 45 | GO:0004845: uracil phosphoribosyltransferase activity | 1.21E-03 |
| 46 | GO:0016836: hydro-lyase activity | 1.21E-03 |
| 47 | GO:0004045: aminoacyl-tRNA hydrolase activity | 1.21E-03 |
| 48 | GO:0016987: sigma factor activity | 1.21E-03 |
| 49 | GO:0004130: cytochrome-c peroxidase activity | 1.89E-03 |
| 50 | GO:0008200: ion channel inhibitor activity | 1.89E-03 |
| 51 | GO:0005247: voltage-gated chloride channel activity | 1.89E-03 |
| 52 | GO:0004605: phosphatidate cytidylyltransferase activity | 1.89E-03 |
| 53 | GO:0080030: methyl indole-3-acetate esterase activity | 1.89E-03 |
| 54 | GO:0004849: uridine kinase activity | 2.27E-03 |
| 55 | GO:0004124: cysteine synthase activity | 2.27E-03 |
| 56 | GO:0051920: peroxiredoxin activity | 2.27E-03 |
| 57 | GO:0004519: endonuclease activity | 2.42E-03 |
| 58 | GO:0016168: chlorophyll binding | 2.43E-03 |
| 59 | GO:0019899: enzyme binding | 2.67E-03 |
| 60 | GO:0008236: serine-type peptidase activity | 2.84E-03 |
| 61 | GO:0016209: antioxidant activity | 3.09E-03 |
| 62 | GO:0008312: 7S RNA binding | 3.09E-03 |
| 63 | GO:0004034: aldose 1-epimerase activity | 3.09E-03 |
| 64 | GO:0004222: metalloendopeptidase activity | 3.29E-03 |
| 65 | GO:0003747: translation release factor activity | 4.00E-03 |
| 66 | GO:0051539: 4 iron, 4 sulfur cluster binding | 4.30E-03 |
| 67 | GO:0008378: galactosyltransferase activity | 6.06E-03 |
| 68 | GO:0004089: carbonate dehydratase activity | 6.61E-03 |
| 69 | GO:0102337: 3-oxo-cerotoyl-CoA synthase activity | 8.41E-03 |
| 70 | GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity | 8.41E-03 |
| 71 | GO:0031409: pigment binding | 8.41E-03 |
| 72 | GO:0102336: 3-oxo-arachidoyl-CoA synthase activity | 8.41E-03 |
| 73 | GO:0051536: iron-sulfur cluster binding | 9.03E-03 |
| 74 | GO:0016758: transferase activity, transferring hexosyl groups | 1.14E-02 |
| 75 | GO:0022891: substrate-specific transmembrane transporter activity | 1.17E-02 |
| 76 | GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | 1.20E-02 |
| 77 | GO:0004252: serine-type endopeptidase activity | 1.30E-02 |
| 78 | GO:0008080: N-acetyltransferase activity | 1.47E-02 |
| 79 | GO:0010181: FMN binding | 1.54E-02 |
| 80 | GO:0016853: isomerase activity | 1.54E-02 |
| 81 | GO:0016762: xyloglucan:xyloglucosyl transferase activity | 1.70E-02 |
| 82 | GO:0008237: metallopeptidase activity | 2.04E-02 |
| 83 | GO:0042802: identical protein binding | 2.06E-02 |
| 84 | GO:0016491: oxidoreductase activity | 2.23E-02 |
| 85 | GO:0004721: phosphoprotein phosphatase activity | 2.48E-02 |
| 86 | GO:0016798: hydrolase activity, acting on glycosyl bonds | 2.48E-02 |
| 87 | GO:0004601: peroxidase activity | 2.51E-02 |
| 88 | GO:0016788: hydrolase activity, acting on ester bonds | 2.56E-02 |
| 89 | GO:0016740: transferase activity | 2.70E-02 |
| 90 | GO:0030246: carbohydrate binding | 3.05E-02 |
| 91 | GO:0003993: acid phosphatase activity | 3.27E-02 |
| 92 | GO:0004364: glutathione transferase activity | 3.68E-02 |
| 93 | GO:0005525: GTP binding | 3.91E-02 |
| 94 | GO:0004722: protein serine/threonine phosphatase activity | 4.07E-02 |
| 95 | GO:0005198: structural molecule activity | 4.12E-02 |
| 96 | GO:0051287: NAD binding | 4.34E-02 |
| 97 | GO:0003924: GTPase activity | 4.57E-02 |
| 98 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 4.68E-02 |
| 99 | GO:0003690: double-stranded DNA binding | 4.80E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009507: chloroplast | 1.69E-54 |
| 2 | GO:0009570: chloroplast stroma | 4.24E-33 |
| 3 | GO:0009941: chloroplast envelope | 4.28E-25 |
| 4 | GO:0009535: chloroplast thylakoid membrane | 7.69E-18 |
| 5 | GO:0031977: thylakoid lumen | 1.22E-14 |
| 6 | GO:0009543: chloroplast thylakoid lumen | 4.86E-14 |
| 7 | GO:0009579: thylakoid | 5.19E-09 |
| 8 | GO:0009534: chloroplast thylakoid | 7.48E-08 |
| 9 | GO:0005840: ribosome | 1.00E-06 |
| 10 | GO:0031969: chloroplast membrane | 2.43E-05 |
| 11 | GO:0009536: plastid | 9.47E-05 |
| 12 | GO:0009533: chloroplast stromal thylakoid | 1.03E-04 |
| 13 | GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex | 1.73E-04 |
| 14 | GO:0009515: granal stacked thylakoid | 1.73E-04 |
| 15 | GO:0080085: signal recognition particle, chloroplast targeting | 3.92E-04 |
| 16 | GO:0048046: apoplast | 5.02E-04 |
| 17 | GO:0010007: magnesium chelatase complex | 6.40E-04 |
| 18 | GO:0009509: chromoplast | 6.40E-04 |
| 19 | GO:0042651: thylakoid membrane | 7.39E-04 |
| 20 | GO:0009654: photosystem II oxygen evolving complex | 7.39E-04 |
| 21 | GO:0016020: membrane | 8.84E-04 |
| 22 | GO:0019898: extrinsic component of membrane | 1.50E-03 |
| 23 | GO:0034707: chloride channel complex | 1.89E-03 |
| 24 | GO:0005618: cell wall | 1.90E-03 |
| 25 | GO:0005786: signal recognition particle, endoplasmic reticulum targeting | 3.54E-03 |
| 26 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 4.00E-03 |
| 27 | GO:0022626: cytosolic ribosome | 4.76E-03 |
| 28 | GO:0000311: plastid large ribosomal subunit | 6.06E-03 |
| 29 | GO:0032040: small-subunit processome | 6.06E-03 |
| 30 | GO:0030095: chloroplast photosystem II | 7.20E-03 |
| 31 | GO:0030076: light-harvesting complex | 7.79E-03 |
| 32 | GO:0015935: small ribosomal subunit | 1.03E-02 |
| 33 | GO:0009532: plastid stroma | 1.03E-02 |
| 34 | GO:0010287: plastoglobule | 1.11E-02 |
| 35 | GO:0043231: intracellular membrane-bounded organelle | 1.15E-02 |
| 36 | GO:0009522: photosystem I | 1.54E-02 |
| 37 | GO:0009523: photosystem II | 1.62E-02 |
| 38 | GO:0009505: plant-type cell wall | 2.07E-02 |
| 39 | GO:0030529: intracellular ribonucleoprotein complex | 2.21E-02 |
| 40 | GO:0022625: cytosolic large ribosomal subunit | 3.27E-02 |