gene detail

Gene description

TAIR ID: AT3G07780

Short description: Protein of unknown function (DUF1423)

Pathogen responsiveness: -0.87

General responsiveness: -1.41

Orthologous

Rice: No orthologous gene

Maize: No orthologous gene

Wheat: No orthologous gene

GO biological process

maintenance of root meristem identity, root meristem specification, maintenance of shoot apical meristem identity, primary root development, embryo development ending in seed dormancy, regulation of defense response, regulation of gene expression, transport of virus in host, cell to cell

GO cellular component

nucleus, plastid

GO molecular function

protein binding, metal ion binding, protein homodimerization activity, protein heterodimerization activity

Protein domain

Pfam	PF07227, PHD - plant homeodomain finger protein
Pfam	PF16312, Coiled-coil region of Oberon
SMART	SM00249, PHD

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

Not involved in KEGG pathway

Transcriptional regulation

Regulator:
AT5G56110, AT5G13790, AT1G24260, AT4G36990

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 33 (Top5%)

click to view PPI network

Coexpression network

GSE26679_WT_GC  view
GSE56094_WT_HRPA-  view
GSE13739_WT_GO  view
GSE13739_EDS16_GO  view
GSE5686_WT_GO  view
GSE56094_WT_PSTDC3000  view
GSE26679_EDR1_GC  view

Differentially expressed condition

5 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE26679	Col, WT, GC 0 h	Col, WT, GC 36 h	1.94	2.42E-09
GSE26679	Col, edr1, GC 0 h	Col, edr1, GC 18 h	2.31	1.11E-10
GSE26679	Col, edr1, GC 0 h	Col, edr1, GC 36 h	2.79	1.95E-12
GSE37269	Ei2, WT, control	Ei2, WT, TEV 21 d	-2.27	8.60E-03
GSE56094	Col, WT, control 13 h	Col, WT, PstDC3000 13 h	1.56	3.90E-10