Gene: AT3G05500
     

Gene description


TAIR ID: AT3G05500

Short description: Rubber elongation factor protein (REF)

Pathogen responsiveness: 0.73

General responsiveness: -0.95

Orthologous


Rice: No orthologous gene
Maize:

GRMZM2G150367  

Wheat: No orthologous gene

GO biological process


positive regulation of growth, translational elongation, lipid particle organization, positive regulation of response to water deprivation, developmental vegetative growth, lipid storage


GO cellular component


vacuole, lipid droplet, cytoplasm


GO molecular function


translation elongation factor activity


Protein domain


PfamPF05755, Rubber elongation factor protein (REF)

Metabolic pathway


Not involved in metabolic pathway


KEGG pathway


Not involved in KEGG pathway


Transcriptional regulation


Regulator:
AT5G13790, AT1G24260

Target:
none

Protein-protein interaction network


The number of partners (degree) is: 1

click to view PPI network

Differentially expressed condition


29 conditions



SeriesControlTreatmentLog2FCAdj. P value
GSE12856Col, ataf1, controlCol, ataf1, Bg h1.684.71E-05
GSE17464Penta, controlPenta, Alternaria brassicicola 3 d-1.696.39E-05
GSE21920Col, WT, mockCol, WT, Pto HopZ1a 6 h1.642.63E-06
GSE45212Col, WT, PstDC3000 AvrRpt2 0 hCol, WT, PstDC3000 AvrRpt2 12 h3.231.37E-14
GSE45212Col, WT, PstDC3000 AvrRpt2 0 hCol, WT, PstDC3000 AvrRpt2 4 h2.325.95E-12
GSE45212Col, WT, PstDC3000 AvrRpt2 0 hCol, WT, PstDC3000 AvrRpt2 8 h3.093.68E-14
GSE45212Col, med14, PstDC3000 AvrRpt2 0 hCol, med14, PstDC3000 AvrRpt2 12 h4.462.85E-16
GSE45212Col, med14, PstDC3000 AvrRpt2 0 hCol, med14, PstDC3000 AvrRpt2 4 h3.261.53E-14
GSE45212Col, med14, PstDC3000 AvrRpt2 0 hCol, med14, PstDC3000 AvrRpt2 8 h4.996.68E-17
GSE45214Col, WT, PstDC3000 AvrRpt2 0 hCol, WT, PstDC3000 AvrRpt2 4 h2.533.20E-12
GSE45214Col, med14, PstDC3000 AvrRpt2 0 hCol, med14, PstDC3000 AvrRpt2 4 h2.691.92E-12
GSE45214Col, med16, PstDC3000 AvrRpt2 0 hCol, med16, PstDC3000 AvrRpt2 4 h3.184.52E-14
GSE45214Col, npr1, PstDC3000 AvrRpt2 0 hCol, npr1, PstDC3000 AvrRpt2 4 h2.272.32E-11
GSE5520Col, WT, control 10 hCol, WT, Cor- 10 h3.391.42E-05
GSE5520Col, WT, control 10 hCol, WT, Cor- hrpS- 10 h2.418.45E-03
GSE5520Col, WT, control 7 hCol, WT, PstDC3000 7 h1.566.38E-03
GSE56094Col, WT, control 10 hCol, WT, PstDC3000 10 h1.614.56E-06
GSE56094Col, WT, control 10 hCol, WT, hrpA- 10 h2.021.26E-07
GSE56094Col, WT, control 11 hCol, WT, PstDC3000 11 h1.795.17E-07
GSE56094Col, WT, control 7 hCol, WT, PstDC3000 7 h1.821.59E-06
GSE56094Col, WT, control 7 hCol, WT, hrpA- 7 h1.728.48E-06
GSE56094Col, WT, control 8 hCol, WT, hrpA- 8 h2.342.16E-09
GSE56094Col, WT, control 9 hCol, WT, PstDC3000 9 h1.608.71E-06
GSE56094Col, WT, control 9 hCol, WT, hrpA- 9 h1.888.03E-07
GSE58954Col, WT, Psm AvrRpt2 0 hCol, WT, Psm AvrRpt2 6 h2.922.70E-03
GSE9674Ws-4, AtMYB30 ox, controlWs-4, AtMYB30 ox, Xanthomonas strain Xcc147 2-4 h2.074.92E-03
GSE9674Ws-4, AtMYB30 ox, controlWs-4, AtMYB30 ox, Xanthomonas strain Xcc147 6 h4.468.36E-05
GSE9674Ws-4, WT, controlWs-4, WT, Xanthomonas strain Xcc147 2-4 h1.968.65E-03
GSE9674Ws-4, WT, controlWs-4, WT, Xanthomonas strain Xcc147 6 h4.211.43E-04






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