Gene: AT2G41500
     

Gene description


TAIR ID: AT2G41500

Short description: WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related

Pathogen responsiveness: -2.10

General responsiveness: -1.16

Orthologous


Rice:

OS03G0355400   OS03G0355200  

Maize:

GRMZM2G101689  

Wheat: No orthologous gene

GO biological process


mRNA splicing, via spliceosome, embryo sac egg cell differentiation, cell-cell signaling, embryo sac development, cell fate determination


GO cellular component


nucleus, nuclear speck, Cul4-RING E3 ubiquitin ligase complex, U4/U6 x U5 tri-snRNP complex


GO molecular function


U6 snRNA binding, U4 snRNA binding


Protein domain


PfamPF00400, WD domain, G-beta repeat
PfamPF08799, pre-mRNA processing factor 4 (PRP4) like
SMARTSM00320, WD40
SMARTSM00500, SFM

Metabolic pathway


Not involved in metabolic pathway


Transcriptional regulation


Regulator:
AT1G73805, AT5G26920, AT1G24260

Target:
none

Protein-protein interaction network


No Interactor


Differentially expressed condition


4 conditions



SeriesControlTreatmentLog2FCAdj. P value
GSE26679Col, WT, GC 0 hCol, WT, GC 18 h1.732.10E-11
GSE26679Col, WT, GC 0 hCol, WT, GC 36 h1.607.17E-11
GSE26679Col, edr1, GC 0 hCol, edr1, GC 18 h1.846.08E-12
GSE26679Col, edr1, GC 0 hCol, edr1, GC 36 h1.951.16E-12






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