co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G41500

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0043487: regulation of RNA stability	0.00E+00
2	GO:0010046: response to mycotoxin	0.00E+00
3	GO:0010245: radial microtubular system formation	0.00E+00
4	GO:0034263: positive regulation of autophagy in response to ER overload	0.00E+00
5	GO:0090306: spindle assembly involved in meiosis	0.00E+00
6	GO:0019481: L-alanine catabolic process, by transamination	0.00E+00
7	GO:0000184: nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	2.84E-05
8	GO:0034628: 'de novo' NAD biosynthetic process from aspartate	4.74E-05
9	GO:0015853: adenine transport	4.74E-05
10	GO:0015854: guanine transport	4.74E-05
11	GO:0010155: regulation of proton transport	1.17E-04
12	GO:0006611: protein export from nucleus	1.17E-04
13	GO:0010372: positive regulation of gibberellin biosynthetic process	1.17E-04
14	GO:2000030: regulation of response to red or far red light	1.17E-04
15	GO:0051176: positive regulation of sulfur metabolic process	2.00E-04
16	GO:0006081: cellular aldehyde metabolic process	2.00E-04
17	GO:0000055: ribosomal large subunit export from nucleus	2.00E-04
18	GO:0000394: RNA splicing, via endonucleolytic cleavage and ligation	2.00E-04
19	GO:0070475: rRNA base methylation	2.00E-04
20	GO:0015696: ammonium transport	2.94E-04
21	GO:0009558: embryo sac cellularization	2.94E-04
22	GO:0006986: response to unfolded protein	2.94E-04
23	GO:0007004: telomere maintenance via telomerase	2.94E-04
24	GO:0030100: regulation of endocytosis	2.94E-04
25	GO:0009694: jasmonic acid metabolic process	3.94E-04
26	GO:0033320: UDP-D-xylose biosynthetic process	3.94E-04
27	GO:0010483: pollen tube reception	3.94E-04
28	GO:0072488: ammonium transmembrane transport	3.94E-04
29	GO:0006536: glutamate metabolic process	3.94E-04
30	GO:0007112: male meiosis cytokinesis	3.94E-04
31	GO:0046686: response to cadmium ion	3.98E-04
32	GO:0009816: defense response to bacterium, incompatible interaction	4.56E-04
33	GO:0030041: actin filament polymerization	5.00E-04
34	GO:0007029: endoplasmic reticulum organization	5.00E-04
35	GO:0009435: NAD biosynthetic process	5.00E-04
36	GO:0030308: negative regulation of cell growth	5.00E-04
37	GO:0006014: D-ribose metabolic process	6.13E-04
38	GO:0016070: RNA metabolic process	6.13E-04
39	GO:0000470: maturation of LSU-rRNA	6.13E-04
40	GO:0042732: D-xylose metabolic process	6.13E-04
41	GO:0048317: seed morphogenesis	6.13E-04
42	GO:0009861: jasmonic acid and ethylene-dependent systemic resistance	7.31E-04
43	GO:0046777: protein autophosphorylation	7.54E-04
44	GO:0007205: protein kinase C-activating G-protein coupled receptor signaling pathway	8.54E-04
45	GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway	8.54E-04
46	GO:0006402: mRNA catabolic process	9.81E-04
47	GO:0045010: actin nucleation	9.81E-04
48	GO:1900150: regulation of defense response to fungus	9.81E-04
49	GO:0030968: endoplasmic reticulum unfolded protein response	1.11E-03
50	GO:0010208: pollen wall assembly	1.11E-03
51	GO:0060321: acceptance of pollen	1.11E-03
52	GO:0009408: response to heat	1.12E-03
53	GO:0009060: aerobic respiration	1.25E-03
54	GO:0007338: single fertilization	1.25E-03
55	GO:0046685: response to arsenic-containing substance	1.25E-03
56	GO:0008202: steroid metabolic process	1.40E-03
57	GO:0000387: spliceosomal snRNP assembly	1.40E-03
58	GO:0009624: response to nematode	1.66E-03
59	GO:0048229: gametophyte development	1.70E-03
60	GO:0010015: root morphogenesis	1.70E-03
61	GO:0009742: brassinosteroid mediated signaling pathway	1.76E-03
62	GO:0006468: protein phosphorylation	1.82E-03
63	GO:0010105: negative regulation of ethylene-activated signaling pathway	1.86E-03
64	GO:0071365: cellular response to auxin stimulus	1.86E-03
65	GO:0034605: cellular response to heat	2.20E-03
66	GO:0046854: phosphatidylinositol phosphorylation	2.38E-03
67	GO:0009225: nucleotide-sugar metabolic process	2.38E-03
68	GO:0006863: purine nucleobase transport	2.56E-03
69	GO:0006406: mRNA export from nucleus	2.74E-03
70	GO:2000377: regulation of reactive oxygen species metabolic process	2.74E-03
71	GO:0009863: salicylic acid mediated signaling pathway	2.74E-03
72	GO:0061077: chaperone-mediated protein folding	3.12E-03
73	GO:0006457: protein folding	3.18E-03
74	GO:0016226: iron-sulfur cluster assembly	3.32E-03
75	GO:0030433: ubiquitin-dependent ERAD pathway	3.32E-03
76	GO:0031348: negative regulation of defense response	3.32E-03
77	GO:0009686: gibberellin biosynthetic process	3.52E-03
78	GO:0009306: protein secretion	3.73E-03
79	GO:0042147: retrograde transport, endosome to Golgi	3.93E-03
80	GO:0010501: RNA secondary structure unwinding	4.15E-03
81	GO:0009741: response to brassinosteroid	4.37E-03
82	GO:0009960: endosperm development	4.37E-03
83	GO:0007018: microtubule-based movement	4.59E-03
84	GO:0019252: starch biosynthetic process	4.81E-03
85	GO:0009791: post-embryonic development	4.81E-03
86	GO:0010193: response to ozone	5.04E-03
87	GO:0009723: response to ethylene	5.06E-03
88	GO:0031047: gene silencing by RNA	5.28E-03
89	GO:0006914: autophagy	5.75E-03
90	GO:0010286: heat acclimation	6.00E-03
91	GO:0000910: cytokinesis	6.25E-03
92	GO:0001666: response to hypoxia	6.50E-03
93	GO:0009615: response to virus	6.50E-03
94	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	6.75E-03
95	GO:0009627: systemic acquired resistance	7.01E-03
96	GO:0006397: mRNA processing	8.34E-03
97	GO:0048364: root development	8.34E-03
98	GO:0006499: N-terminal protein myristoylation	8.37E-03
99	GO:0009834: plant-type secondary cell wall biogenesis	8.37E-03
100	GO:0010119: regulation of stomatal movement	8.65E-03
101	GO:0016051: carbohydrate biosynthetic process	9.22E-03
102	GO:0009873: ethylene-activated signaling pathway	1.03E-02
103	GO:0006897: endocytosis	1.04E-02
104	GO:0008283: cell proliferation	1.10E-02
105	GO:0009640: photomorphogenesis	1.10E-02
106	GO:0009965: leaf morphogenesis	1.20E-02
107	GO:0009846: pollen germination	1.29E-02
108	GO:0006364: rRNA processing	1.36E-02
109	GO:0009585: red, far-red light phototransduction	1.36E-02
110	GO:0009738: abscisic acid-activated signaling pathway	1.38E-02
111	GO:0010224: response to UV-B	1.39E-02
112	GO:0009611: response to wounding	1.45E-02
113	GO:0009737: response to abscisic acid	1.46E-02
114	GO:0009620: response to fungus	1.64E-02
115	GO:0016569: covalent chromatin modification	1.67E-02
116	GO:0006396: RNA processing	1.78E-02
117	GO:0009845: seed germination	2.16E-02
118	GO:0006633: fatty acid biosynthetic process	2.41E-02
119	GO:0007166: cell surface receptor signaling pathway	2.83E-02
120	GO:0042742: defense response to bacterium	2.89E-02
121	GO:0008380: RNA splicing	2.92E-02
122	GO:0009860: pollen tube growth	3.70E-02
123	GO:0048366: leaf development	3.95E-02
124	GO:0080167: response to karrikin	4.09E-02
125	GO:0006886: intracellular protein transport	4.76E-02
126	GO:0006869: lipid transport	4.97E-02

Rank	GO Term	Adjusted P value
1	GO:0033721: aldehyde dehydrogenase (NADP+) activity	0.00E+00
2	GO:0080123: jasmonate-amino synthetase activity	0.00E+00
3	GO:0070566: adenylyltransferase activity	0.00E+00
4	GO:0008987: quinolinate synthetase A activity	0.00E+00
5	GO:0005524: ATP binding	1.12E-06
6	GO:0015398: high-affinity secondary active ammonium transmembrane transporter activity	4.74E-05
7	GO:0009383: rRNA (cytosine-C5-)-methyltransferase activity	4.74E-05
8	GO:0017151: DEAD/H-box RNA helicase binding	4.74E-05
9	GO:0030544: Hsp70 protein binding	4.74E-05
10	GO:0036002: pre-mRNA binding	1.17E-04
11	GO:0043021: ribonucleoprotein complex binding	1.17E-04
12	GO:0070034: telomerase RNA binding	1.17E-04
13	GO:0004540: ribonuclease activity	1.42E-04
14	GO:0004674: protein serine/threonine kinase activity	1.64E-04
15	GO:0004030: aldehyde dehydrogenase [NAD(P)+] activity	2.00E-04
16	GO:0016301: kinase activity	2.29E-04
17	GO:0043023: ribosomal large subunit binding	2.94E-04
18	GO:0004351: glutamate decarboxylase activity	2.94E-04
19	GO:0000285: 1-phosphatidylinositol-3-phosphate 5-kinase activity	2.94E-04
20	GO:0004021: L-alanine:2-oxoglutarate aminotransferase activity	2.94E-04
21	GO:0002020: protease binding	5.00E-04
22	GO:0017070: U6 snRNA binding	5.00E-04
23	GO:0004029: aldehyde dehydrogenase (NAD) activity	6.13E-04
24	GO:0008519: ammonium transmembrane transporter activity	6.13E-04
25	GO:0048040: UDP-glucuronate decarboxylase activity	6.13E-04
26	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	7.31E-04
27	GO:0070403: NAD+ binding	7.31E-04
28	GO:0004747: ribokinase activity	7.31E-04
29	GO:0019899: enzyme binding	8.54E-04
30	GO:0004143: diacylglycerol kinase activity	8.54E-04
31	GO:0042162: telomeric DNA binding	8.54E-04
32	GO:0008865: fructokinase activity	9.81E-04
33	GO:0003951: NAD+ kinase activity	1.11E-03
34	GO:0008142: oxysterol binding	1.11E-03
35	GO:0031625: ubiquitin protein ligase binding	1.31E-03
36	GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity	1.40E-03
37	GO:0016308: 1-phosphatidylinositol-4-phosphate 5-kinase activity	1.55E-03
38	GO:0008047: enzyme activator activity	1.55E-03
39	GO:0003779: actin binding	1.62E-03
40	GO:0004672: protein kinase activity	1.84E-03
41	GO:0004521: endoribonuclease activity	1.86E-03
42	GO:0003729: mRNA binding	1.88E-03
43	GO:0005345: purine nucleobase transmembrane transporter activity	2.93E-03
44	GO:0008536: Ran GTPase binding	4.37E-03
45	GO:0004518: nuclease activity	5.28E-03
46	GO:0004004: ATP-dependent RNA helicase activity	7.28E-03
47	GO:0051539: 4 iron, 4 sulfur cluster binding	1.01E-02
48	GO:0035091: phosphatidylinositol binding	1.16E-02
49	GO:0005515: protein binding	1.30E-02
50	GO:0003777: microtubule motor activity	1.46E-02
51	GO:0022857: transmembrane transporter activity	1.67E-02
52	GO:0051082: unfolded protein binding	1.75E-02
53	GO:0008026: ATP-dependent helicase activity	1.82E-02
54	GO:0030246: carbohydrate binding	1.92E-02
55	GO:0030170: pyridoxal phosphate binding	2.20E-02
56	GO:0008565: protein transporter activity	2.33E-02
57	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	2.45E-02
58	GO:0008017: microtubule binding	2.66E-02
59	GO:0005509: calcium ion binding	2.66E-02
60	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	3.05E-02
61	GO:0003824: catalytic activity	3.17E-02
62	GO:0005215: transporter activity	3.19E-02
63	GO:0004842: ubiquitin-protein transferase activity	3.98E-02
64	GO:0042803: protein homodimerization activity	4.81E-02

Rank	GO Term	Adjusted P value
1	GO:0043680: filiform apparatus	0.00E+00
2	GO:0009506: plasmodesma	3.62E-07
3	GO:0005886: plasma membrane	8.82E-06
4	GO:0016442: RISC complex	4.74E-05
5	GO:0071007: U2-type catalytic step 2 spliceosome	1.17E-04
6	GO:0005697: telomerase holoenzyme complex	1.17E-04
7	GO:0071006: U2-type catalytic step 1 spliceosome	2.94E-04
8	GO:0000932: P-body	4.32E-04
9	GO:0000974: Prp19 complex	6.13E-04
10	GO:0016363: nuclear matrix	7.31E-04
11	GO:0010494: cytoplasmic stress granule	1.25E-03
12	GO:0048471: perinuclear region of cytoplasm	1.70E-03
13	GO:0019013: viral nucleocapsid	2.03E-03
14	GO:0009524: phragmoplast	2.19E-03
15	GO:0005871: kinesin complex	3.93E-03
16	GO:0000145: exocyst	5.28E-03
17	GO:0032580: Golgi cisterna membrane	5.75E-03
18	GO:0005829: cytosol	6.12E-03
19	GO:0005643: nuclear pore	7.81E-03
20	GO:0019005: SCF ubiquitin ligase complex	7.81E-03
21	GO:0005730: nucleolus	1.09E-02
22	GO:0016021: integral component of membrane	1.27E-02
23	GO:0005635: nuclear envelope	1.43E-02
24	GO:0010008: endosome membrane	1.57E-02
25	GO:0005737: cytoplasm	1.90E-02
26	GO:0005783: endoplasmic reticulum	1.95E-02
27	GO:0005768: endosome	2.60E-02
28	GO:0005774: vacuolar membrane	2.70E-02
29	GO:0005618: cell wall	3.19E-02
30	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	3.75E-02
31	GO:0005874: microtubule	4.00E-02
32	GO:0005634: nucleus	4.15E-02
33	GO:0005789: endoplasmic reticulum membrane	4.39E-02
34	GO:0005773: vacuole	4.57E-02