gene detail

Gene description

TAIR ID: AT2G40100

Short description: light harvesting complex photosystem II

Pathogen responsiveness: -0.50

General responsiveness: 2.33

Orthologous

Rice: No orthologous gene

Maize: No orthologous gene

Wheat: No orthologous gene

GO biological process

response to blue light, photosynthesis, light harvesting, light harvesting in photosystem I, protein-chromophore linkage, response to far red light, response to red light

GO cellular component

chloroplast thylakoid, photosystem II, chloroplast thylakoid membrane, photosystem I, plastoglobule, light-harvesting complex, chloroplast envelope, chloroplast, integral component of membrane, membrane, thylakoid

GO molecular function

metal ion binding, chlorophyll binding, pigment binding

Protein domain

Pfam	PF00504, Chlorophyll A-B binding protein

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

PATH:ath00196: Photosynthesis - antenna proteins

Transcriptional regulation

Regulator:
AT5G56110, AT5G13790, AT1G24260, AT5G61850

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 1

click to view PPI network

Coexpression network

GSE56094_WT_HRPA-  view
GSE13739_WT_GO  view
GSE13739_EDS16_GO  view
GSE56094_WT_PSTDC3000  view

Differentially expressed condition

13 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE17500	Col, 35S:AFB1, control 0 h	Col, 35S:AFB1, PstDC3000 24 h	-1.66	1.29E-04
GSE17500	Col, WT, control 0 h	Col, WT, PstDC3000 24 h	-2.05	1.25E-05
GSE17500	Col, miR393, control 0 h	Col, miR393, PstDC3000 24 h	-1.51	2.43E-04
GSE18978	Col, WT, control 24 h	Col, WT, PsmES4326 24 h	-4.04	1.77E-12
GSE20278	Col, RPL18-HF, control	Col, RPL18-HF, TuMV 10 d	-1.55	3.62E-03
GSE26679	Col, WT, GC 0 h	Col, WT, GC 96 h	-1.80	1.86E-06
GSE26679	Col, edr1, GC 0 h	Col, edr1, GC 36 h	-1.54	2.38E-06
GSE26679	Col, edr1, GC 0 h	Col, edr1, GC 96 h	-1.75	2.87E-06
GSE40544	Col, WT, control	Col, WT, PstDC3000 AvrRpt2	-1.69	7.21E-04
GSE40544	Col, WT, control	Col, WT, PstDC3000 EV	-1.63	9.37E-04
GSE50526	Col, WT, mock 24 h	Col, WT, A. brassicicola 24 h	-2.41	2.55E-02
GSE5520	Col, WT, control 7 h	Col, WT, PstDC3000 7 h	-3.28	8.67E-07
GSE6176	Col, WT, control 12 h	Col, WT, PstDC3000 12 h	-1.57	4.39E-04