Gene: AT2G39930
     

Gene description


TAIR ID: AT2G39930

Short description: isoamylase 1

Pathogen responsiveness: 0.37

General responsiveness: -0.31

Orthologous


Rice: No orthologous gene
Maize:

GRMZM2G138060  

Wheat: No orthologous gene

GO biological process


amylopectin biosynthetic process, glycogen metabolic process, starch biosynthetic process, carbohydrate metabolic process


GO cellular component


chloroplast isoamylase complex, chloroplast


GO molecular function


alpha-amylase activity, hydrolase activity, hydrolyzing O-glycosyl compounds, isoamylase activity


Protein domain


PfamPF02922, Carbohydrate-binding module 48 (Isoamylase N-terminal domain)
PfamPF00128, Alpha amylase, catalytic domain
SMARTSM00642, Aamy

Transcriptional regulation


Regulator:
AT1G24260

Target:
none

Protein-protein interaction network


The number of partners (degree) is: 2

click to view PPI network

Differentially expressed condition


31 conditions



SeriesControlTreatmentLog2FCAdj. P value
GSE11807Col, ERF104 ox, water 4 hCol, ERF104 ox, Flg22 4 h-1.662.36E-02
GSE11807Col, erf104 ko, water 4 hCol, erf104 ko, Flg22 4 h-2.066.54E-03
GSE17464Laer, controlLaer, Flg22 2 h-2.139.58E-07
GSE17464Penta, controlPenta, Alternaria brassicicola 3 d1.951.43E-06
GSE17500Col, 35S:AFB1, control 0 hCol, 35S:AFB1, PstDC3000 24 h-2.031.77E-05
GSE17500Col, WT, control 0 hCol, WT, PstDC3000 24 h-2.382.07E-06
GSE17500Col, miR393, control 0 hCol, miR393, PstDC3000 24 h-2.111.05E-05
GSE18978Col, WT, control 24 hCol, WT, PsmES4326 24 h-3.818.46E-08
GSE21920Col, WT, mockCol, WT, Pto HopZ1a 6 h-1.851.24E-05
GSE45212Col, WT, PstDC3000 AvrRpt2 0 hCol, WT, PstDC3000 AvrRpt2 12 h-2.575.50E-14
GSE45212Col, WT, PstDC3000 AvrRpt2 0 hCol, WT, PstDC3000 AvrRpt2 4 h-1.591.80E-10
GSE45212Col, WT, PstDC3000 AvrRpt2 0 hCol, WT, PstDC3000 AvrRpt2 8 h-1.992.76E-12
GSE45212Col, med14, PstDC3000 AvrRpt2 0 hCol, med14, PstDC3000 AvrRpt2 12 h-2.518.16E-14
GSE45212Col, med14, PstDC3000 AvrRpt2 0 hCol, med14, PstDC3000 AvrRpt2 4 h-2.022.07E-12
GSE45212Col, med14, PstDC3000 AvrRpt2 0 hCol, med14, PstDC3000 AvrRpt2 8 h-2.929.47E-15
GSE45214Col, med16, PstDC3000 AvrRpt2 0 hCol, med16, PstDC3000 AvrRpt2 4 h-2.272.26E-12
GSE5520Col, WT, control 10 hCol, WT, Cor- 10 h-2.331.57E-04
GSE5520Col, WT, control 7 hCol, WT, PstDC3000 7 h-1.872.19E-04
GSE5520Col, WT, control 7 hCol, WT, hrpA- 10 h-1.512.59E-02
GSE56094Col, WT, control 10 hCol, WT, PstDC3000 10 h-2.511.60E-14
GSE56094Col, WT, control 10 hCol, WT, hrpA- 10 h-2.013.09E-09
GSE56094Col, WT, control 11 hCol, WT, PstDC3000 11 h-2.124.12E-11
GSE56094Col, WT, control 11 hCol, WT, hrpA- 11 h-1.758.40E-08
GSE56094Col, WT, control 12 hCol, WT, PstDC3000 12 h-1.921.14E-09
GSE56094Col, WT, control 13 hCol, WT, PstDC3000 13 h-2.141.62E-11
GSE56094Col, WT, control 7 hCol, WT, hrpA- 7 h-1.543.81E-06
GSE56094Col, WT, control 8 hCol, WT, hrpA- 8 h-1.823.83E-08
GSE56094Col, WT, control 9 hCol, WT, PstDC3000 9 h-1.941.58E-09
GSE56094Col, WT, control 9 hCol, WT, hrpA- 9 h-1.853.35E-08
GSE5615Col, WT, water 4 hCol, WT, HrpZ 4 h-1.611.75E-05
GSE58954Col, WT, Psm AvrRpt2 0 hCol, WT, Psm AvrRpt2 6 h-2.711.35E-03






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