Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT2G39930

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0042817: pyridoxal metabolic process0.00E+00
2GO:0090042: tubulin deacetylation0.00E+00
3GO:0006399: tRNA metabolic process0.00E+00
4GO:0046040: IMP metabolic process0.00E+00
5GO:0006429: leucyl-tRNA aminoacylation0.00E+00
6GO:1905421: regulation of plant organ morphogenesis0.00E+00
7GO:0030155: regulation of cell adhesion0.00E+00
8GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate0.00E+00
9GO:0010059: positive regulation of atrichoblast fate specification0.00E+00
10GO:0033614: chloroplast proton-transporting ATP synthase complex assembly0.00E+00
11GO:0090071: negative regulation of ribosome biogenesis0.00E+00
12GO:0046460: neutral lipid biosynthetic process0.00E+00
13GO:0006167: AMP biosynthetic process0.00E+00
14GO:0044249: cellular biosynthetic process0.00E+00
15GO:0042407: cristae formation0.00E+00
16GO:0009658: chloroplast organization7.56E-12
17GO:0009793: embryo development ending in seed dormancy2.07E-06
18GO:0042793: transcription from plastid promoter3.80E-06
19GO:0010020: chloroplast fission4.47E-06
20GO:0042026: protein refolding6.54E-06
21GO:1900871: chloroplast mRNA modification6.94E-06
22GO:0009657: plastid organization2.22E-05
23GO:0016556: mRNA modification5.29E-05
24GO:0010027: thylakoid membrane organization1.21E-04
25GO:0006418: tRNA aminoacylation for protein translation2.25E-04
26GO:1901259: chloroplast rRNA processing2.80E-04
27GO:0006458: 'de novo' protein folding2.80E-04
28GO:0010063: positive regulation of trichoblast fate specification3.94E-04
29GO:0042547: cell wall modification involved in multidimensional cell growth3.94E-04
30GO:0019478: D-amino acid catabolic process3.94E-04
31GO:0042371: vitamin K biosynthetic process3.94E-04
32GO:0006436: tryptophanyl-tRNA aminoacylation3.94E-04
33GO:0000023: maltose metabolic process3.94E-04
34GO:0010729: positive regulation of hydrogen peroxide biosynthetic process3.94E-04
35GO:0006419: alanyl-tRNA aminoacylation3.94E-04
36GO:2000025: regulation of leaf formation3.94E-04
37GO:0046901: tetrahydrofolylpolyglutamate biosynthetic process3.94E-04
38GO:0000476: maturation of 4.5S rRNA3.94E-04
39GO:0000967: rRNA 5'-end processing3.94E-04
40GO:0070509: calcium ion import3.94E-04
41GO:0006438: valyl-tRNA aminoacylation3.94E-04
42GO:0009790: embryo development4.20E-04
43GO:0006353: DNA-templated transcription, termination4.53E-04
44GO:0009451: RNA modification5.92E-04
45GO:0000373: Group II intron splicing6.63E-04
46GO:1900865: chloroplast RNA modification7.83E-04
47GO:0007154: cell communication8.55E-04
48GO:0018026: peptidyl-lysine monomethylation8.55E-04
49GO:0006423: cysteinyl-tRNA aminoacylation8.55E-04
50GO:0044208: 'de novo' AMP biosynthetic process8.55E-04
51GO:0009220: pyrimidine ribonucleotide biosynthetic process8.55E-04
52GO:1904143: positive regulation of carotenoid biosynthetic process8.55E-04
53GO:0001682: tRNA 5'-leader removal8.55E-04
54GO:0034470: ncRNA processing8.55E-04
55GO:0006420: arginyl-tRNA aminoacylation8.55E-04
56GO:0010198: synergid death8.55E-04
57GO:0006739: NADP metabolic process8.55E-04
58GO:0009629: response to gravity8.55E-04
59GO:0060359: response to ammonium ion8.55E-04
60GO:0048255: mRNA stabilization8.55E-04
61GO:1902326: positive regulation of chlorophyll biosynthetic process8.55E-04
62GO:0005983: starch catabolic process1.20E-03
63GO:0043157: response to cation stress1.39E-03
64GO:0045910: negative regulation of DNA recombination1.39E-03
65GO:0048281: inflorescence morphogenesis1.39E-03
66GO:0006954: inflammatory response1.39E-03
67GO:0071732: cellular response to nitric oxide1.71E-03
68GO:0006164: purine nucleotide biosynthetic process2.00E-03
69GO:0010148: transpiration2.00E-03
70GO:0043572: plastid fission2.00E-03
71GO:2001141: regulation of RNA biosynthetic process2.00E-03
72GO:0010071: root meristem specification2.00E-03
73GO:0051085: chaperone mediated protein folding requiring cofactor2.00E-03
74GO:0009152: purine ribonucleotide biosynthetic process2.00E-03
75GO:0010239: chloroplast mRNA processing2.00E-03
76GO:0008615: pyridoxine biosynthetic process2.00E-03
77GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity2.00E-03
78GO:0061077: chaperone-mediated protein folding2.57E-03
79GO:0006734: NADH metabolic process2.69E-03
80GO:0044205: 'de novo' UMP biosynthetic process2.69E-03
81GO:0051781: positive regulation of cell division2.69E-03
82GO:0042274: ribosomal small subunit biogenesis2.69E-03
83GO:0006730: one-carbon metabolic process2.81E-03
84GO:0007005: mitochondrion organization2.81E-03
85GO:0071369: cellular response to ethylene stimulus3.07E-03
86GO:0010236: plastoquinone biosynthetic process3.44E-03
87GO:0009107: lipoate biosynthetic process3.44E-03
88GO:0032543: mitochondrial translation3.44E-03
89GO:0009664: plant-type cell wall organization3.61E-03
90GO:0008033: tRNA processing3.91E-03
91GO:0032973: amino acid export4.26E-03
92GO:0050665: hydrogen peroxide biosynthetic process4.26E-03
93GO:0009959: negative gravitropism4.26E-03
94GO:0006655: phosphatidylglycerol biosynthetic process4.26E-03
95GO:0030488: tRNA methylation5.13E-03
96GO:0009854: oxidative photosynthetic carbon pathway5.13E-03
97GO:0019509: L-methionine salvage from methylthioadenosine5.13E-03
98GO:0042372: phylloquinone biosynthetic process5.13E-03
99GO:0017148: negative regulation of translation5.13E-03
100GO:0009942: longitudinal axis specification5.13E-03
101GO:0034389: lipid particle organization5.13E-03
102GO:0009630: gravitropism5.56E-03
103GO:0010583: response to cyclopentenone5.56E-03
104GO:0071281: cellular response to iron ion5.93E-03
105GO:0006400: tRNA modification6.06E-03
106GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process6.06E-03
107GO:0010103: stomatal complex morphogenesis6.06E-03
108GO:0048528: post-embryonic root development6.06E-03
109GO:0009772: photosynthetic electron transport in photosystem II6.06E-03
110GO:0043090: amino acid import6.06E-03
111GO:0070370: cellular heat acclimation6.06E-03
112GO:0048437: floral organ development6.06E-03
113GO:0010196: nonphotochemical quenching6.06E-03
114GO:0010444: guard mother cell differentiation6.06E-03
115GO:0009828: plant-type cell wall loosening6.31E-03
116GO:0070413: trehalose metabolism in response to stress7.05E-03
117GO:0000105: histidine biosynthetic process7.05E-03
118GO:0048564: photosystem I assembly7.05E-03
119GO:0006526: arginine biosynthetic process8.09E-03
120GO:0010204: defense response signaling pathway, resistance gene-independent8.09E-03
121GO:0032544: plastid translation8.09E-03
122GO:0007389: pattern specification process8.09E-03
123GO:0009932: cell tip growth8.09E-03
124GO:0071482: cellular response to light stimulus8.09E-03
125GO:0001558: regulation of cell growth8.09E-03
126GO:0009627: systemic acquired resistance8.42E-03
127GO:0000902: cell morphogenesis9.18E-03
128GO:0006098: pentose-phosphate shunt9.18E-03
129GO:0080144: amino acid homeostasis9.18E-03
130GO:0019432: triglyceride biosynthetic process9.18E-03
131GO:0009416: response to light stimulus9.71E-03
132GO:0048481: plant ovule development9.86E-03
133GO:0031425: chloroplast RNA processing1.03E-02
134GO:0043067: regulation of programmed cell death1.03E-02
135GO:0009098: leucine biosynthetic process1.03E-02
136GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway1.03E-02
137GO:0045036: protein targeting to chloroplast1.15E-02
138GO:0006298: mismatch repair1.15E-02
139GO:0006949: syncytium formation1.15E-02
140GO:0006259: DNA metabolic process1.15E-02
141GO:0006535: cysteine biosynthetic process from serine1.15E-02
142GO:0006352: DNA-templated transcription, initiation1.28E-02
143GO:0006415: translational termination1.28E-02
144GO:0010015: root morphogenesis1.28E-02
145GO:0006265: DNA topological change1.28E-02
146GO:0009089: lysine biosynthetic process via diaminopimelate1.28E-02
147GO:0009073: aromatic amino acid family biosynthetic process1.28E-02
148GO:0016024: CDP-diacylglycerol biosynthetic process1.41E-02
149GO:0045037: protein import into chloroplast stroma1.41E-02
150GO:0009691: cytokinin biosynthetic process1.54E-02
151GO:0050826: response to freezing1.54E-02
152GO:0006094: gluconeogenesis1.54E-02
153GO:2000012: regulation of auxin polar transport1.54E-02
154GO:0010114: response to red light1.62E-02
155GO:0010207: photosystem II assembly1.68E-02
156GO:0006508: proteolysis1.79E-02
157GO:0090351: seedling development1.82E-02
158GO:0070588: calcium ion transmembrane transport1.82E-02
159GO:0006071: glycerol metabolic process1.96E-02
160GO:0000162: tryptophan biosynthetic process1.96E-02
161GO:0005992: trehalose biosynthetic process2.11E-02
162GO:0019344: cysteine biosynthetic process2.11E-02
163GO:0009116: nucleoside metabolic process2.11E-02
164GO:0009944: polarity specification of adaxial/abaxial axis2.11E-02
165GO:0006364: rRNA processing2.19E-02
166GO:0051302: regulation of cell division2.27E-02
167GO:0019953: sexual reproduction2.27E-02
168GO:0016575: histone deacetylation2.27E-02
169GO:0015992: proton transport2.43E-02
170GO:0048511: rhythmic process2.43E-02
171GO:0031348: negative regulation of defense response2.59E-02
172GO:0009814: defense response, incompatible interaction2.59E-02
173GO:0016226: iron-sulfur cluster assembly2.59E-02
174GO:0048366: leaf development2.66E-02
175GO:0048316: seed development2.67E-02
176GO:0001944: vasculature development2.75E-02
177GO:0009831: plant-type cell wall modification involved in multidimensional cell growth2.75E-02
178GO:0080167: response to karrikin2.84E-02
179GO:0042127: regulation of cell proliferation2.92E-02
180GO:0009789: positive regulation of abscisic acid-activated signaling pathway3.09E-02
181GO:0006606: protein import into nucleus3.27E-02
182GO:0048653: anther development3.27E-02
183GO:0015979: photosynthesis3.35E-02
184GO:0006662: glycerol ether metabolic process3.45E-02
185GO:0010305: leaf vascular tissue pattern formation3.45E-02
186GO:0010197: polar nucleus fusion3.45E-02
187GO:0048868: pollen tube development3.45E-02
188GO:0009741: response to brassinosteroid3.45E-02
189GO:0048544: recognition of pollen3.63E-02
190GO:0042752: regulation of circadian rhythm3.63E-02
191GO:0007059: chromosome segregation3.63E-02
192GO:0009646: response to absence of light3.63E-02
193GO:0019252: starch biosynthetic process3.82E-02
194GO:0008654: phospholipid biosynthetic process3.82E-02
195GO:0009851: auxin biosynthetic process3.82E-02
196GO:0002229: defense response to oomycetes4.01E-02
197GO:0032502: developmental process4.20E-02
198GO:0006457: protein folding4.50E-02
199GO:0006464: cellular protein modification process4.59E-02
200GO:0010252: auxin homeostasis4.59E-02
201GO:0071805: potassium ion transmembrane transport4.79E-02
202GO:0006633: fatty acid biosynthetic process4.87E-02
203GO:0006413: translational initiation4.99E-02
204GO:0000910: cytokinesis5.00E-02
RankGO TermAdjusted P value
1GO:0051060: pullulanase activity0.00E+00
2GO:0004823: leucine-tRNA ligase activity0.00E+00
3GO:0004056: argininosuccinate lyase activity0.00E+00
4GO:0015267: channel activity0.00E+00
5GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity0.00E+00
6GO:0004358: glutamate N-acetyltransferase activity0.00E+00
7GO:0004019: adenylosuccinate synthase activity0.00E+00
8GO:0003937: IMP cyclohydrolase activity0.00E+00
9GO:0005363: maltose transmembrane transporter activity0.00E+00
10GO:0010303: limit dextrinase activity0.00E+00
11GO:0004588: orotate phosphoribosyltransferase activity0.00E+00
12GO:0004590: orotidine-5'-phosphate decarboxylase activity0.00E+00
13GO:0004643: phosphoribosylaminoimidazolecarboxamide formyltransferase activity0.00E+00
14GO:0046523: S-methyl-5-thioribose-1-phosphate isomerase activity0.00E+00
15GO:0004561: alpha-N-acetylglucosaminidase activity0.00E+00
16GO:0051721: protein phosphatase 2A binding0.00E+00
17GO:0043014: alpha-tubulin binding0.00E+00
18GO:0042903: tubulin deacetylase activity0.00E+00
19GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity0.00E+00
20GO:0004176: ATP-dependent peptidase activity4.24E-07
21GO:0008237: metallopeptidase activity5.95E-06
22GO:0004326: tetrahydrofolylpolyglutamate synthase activity6.94E-06
23GO:0004519: endonuclease activity5.27E-05
24GO:0043621: protein self-association6.04E-05
25GO:0044183: protein binding involved in protein folding6.63E-05
26GO:0016887: ATPase activity1.52E-04
27GO:0004222: metalloendopeptidase activity2.28E-04
28GO:0052381: tRNA dimethylallyltransferase activity3.94E-04
29GO:0004832: valine-tRNA ligase activity3.94E-04
30GO:0052856: NADHX epimerase activity3.94E-04
31GO:0052857: NADPHX epimerase activity3.94E-04
32GO:0004830: tryptophan-tRNA ligase activity3.94E-04
33GO:0010285: L,L-diaminopimelate aminotransferase activity3.94E-04
34GO:0005227: calcium activated cation channel activity3.94E-04
35GO:0004733: pyridoxamine-phosphate oxidase activity3.94E-04
36GO:0004813: alanine-tRNA ligase activity3.94E-04
37GO:0004812: aminoacyl-tRNA ligase activity4.06E-04
38GO:0003723: RNA binding7.13E-04
39GO:0005525: GTP binding7.84E-04
40GO:0017118: lipoyltransferase activity8.55E-04
41GO:0003852: 2-isopropylmalate synthase activity8.55E-04
42GO:0004814: arginine-tRNA ligase activity8.55E-04
43GO:0016415: octanoyltransferase activity8.55E-04
44GO:0004047: aminomethyltransferase activity8.55E-04
45GO:0004817: cysteine-tRNA ligase activity8.55E-04
46GO:0046524: sucrose-phosphate synthase activity1.39E-03
47GO:0002161: aminoacyl-tRNA editing activity1.39E-03
48GO:0019843: rRNA binding1.65E-03
49GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity2.00E-03
50GO:0016851: magnesium chelatase activity2.00E-03
51GO:0043023: ribosomal large subunit binding2.00E-03
52GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity2.00E-03
53GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity2.00E-03
54GO:0019201: nucleotide kinase activity2.00E-03
55GO:0009678: hydrogen-translocating pyrophosphatase activity2.00E-03
56GO:0048487: beta-tubulin binding2.00E-03
57GO:0016149: translation release factor activity, codon specific2.00E-03
58GO:0042277: peptide binding2.69E-03
59GO:0008891: glycolate oxidase activity2.69E-03
60GO:0004659: prenyltransferase activity2.69E-03
61GO:0016279: protein-lysine N-methyltransferase activity2.69E-03
62GO:0001053: plastid sigma factor activity2.69E-03
63GO:0004045: aminoacyl-tRNA hydrolase activity2.69E-03
64GO:0016987: sigma factor activity2.69E-03
65GO:0019199: transmembrane receptor protein kinase activity2.69E-03
66GO:0030570: pectate lyase activity3.07E-03
67GO:0070696: transmembrane receptor protein serine/threonine kinase binding3.44E-03
68GO:0045300: acyl-[acyl-carrier-protein] desaturase activity3.44E-03
69GO:0005275: amine transmembrane transporter activity3.44E-03
70GO:0016773: phosphotransferase activity, alcohol group as acceptor3.44E-03
71GO:0005524: ATP binding3.92E-03
72GO:0030983: mismatched DNA binding4.26E-03
73GO:0004605: phosphatidate cytidylyltransferase activity4.26E-03
74GO:0080030: methyl indole-3-acetate esterase activity4.26E-03
75GO:0004332: fructose-bisphosphate aldolase activity4.26E-03
76GO:0004526: ribonuclease P activity4.26E-03
77GO:0004556: alpha-amylase activity4.26E-03
78GO:0010181: FMN binding4.53E-03
79GO:0004124: cysteine synthase activity5.13E-03
80GO:0004017: adenylate kinase activity5.13E-03
81GO:0004144: diacylglycerol O-acyltransferase activity5.13E-03
82GO:0004427: inorganic diphosphatase activity6.06E-03
83GO:0051082: unfolded protein binding6.19E-03
84GO:0003684: damaged DNA binding6.31E-03
85GO:0043022: ribosome binding7.05E-03
86GO:0016597: amino acid binding7.12E-03
87GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity8.09E-03
88GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)8.09E-03
89GO:0016829: lyase activity9.13E-03
90GO:0003747: translation release factor activity9.18E-03
91GO:0009672: auxin:proton symporter activity1.03E-02
92GO:0004805: trehalose-phosphatase activity1.15E-02
93GO:0003924: GTPase activity1.32E-02
94GO:0000049: tRNA binding1.41E-02
95GO:0010329: auxin efflux transmembrane transporter activity1.54E-02
96GO:0005262: calcium channel activity1.54E-02
97GO:0004565: beta-galactosidase activity1.54E-02
98GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.68E-02
99GO:0102337: 3-oxo-cerotoyl-CoA synthase activity1.96E-02
100GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity1.96E-02
101GO:0003887: DNA-directed DNA polymerase activity1.96E-02
102GO:0102336: 3-oxo-arachidoyl-CoA synthase activity1.96E-02
103GO:0051536: iron-sulfur cluster binding2.11E-02
104GO:0004407: histone deacetylase activity2.11E-02
105GO:0003690: double-stranded DNA binding2.26E-02
106GO:0015079: potassium ion transmembrane transporter activity2.27E-02
107GO:0015171: amino acid transmembrane transporter activity2.42E-02
108GO:0008408: 3'-5' exonuclease activity2.43E-02
109GO:0047134: protein-disulfide reductase activity3.09E-02
110GO:0004527: exonuclease activity3.45E-02
111GO:0004791: thioredoxin-disulfide reductase activity3.63E-02
112GO:0016853: isomerase activity3.63E-02
113GO:0046872: metal ion binding4.32E-02
114GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor4.39E-02
115GO:0000156: phosphorelay response regulator activity4.39E-02
116GO:0016791: phosphatase activity4.59E-02
117GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity4.79E-02
118GO:0008483: transaminase activity4.79E-02
119GO:0016722: oxidoreductase activity, oxidizing metal ions4.79E-02
120GO:0004675: transmembrane receptor protein serine/threonine kinase activity4.99E-02
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Gene type



Gene DE type