gene detail

Gene description

TAIR ID: AT2G29980

Short description: fatty acid desaturase 3

Pathogen responsiveness: 0.02

General responsiveness: -0.65

Orthologous

Rice: No orthologous gene

Maize: No orthologous gene

Wheat: No orthologous gene

GO biological process

unsaturated fatty acid biosynthetic process, oxidation-reduction process, lipid metabolic process, response to karrikin

GO cellular component

chloroplast, integral component of membrane, endoplasmic reticulum membrane, endoplasmic reticulum

GO molecular function

omega-3 fatty acid desaturase activity, oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water

Protein domain

Pfam	PF00487, Fatty acid desaturase
Pfam	PF11960, Domain of unknown function (DUF3474)

Metabolic pathway

PWY-5997: α-linolenate biosynthesis
PWY-762: phospholipid desaturation

KEGG pathway

Not involved in KEGG pathway

Transcriptional regulation

Regulator:
AT5G13790, AT1G24260, AT2G43010

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 7

click to view PPI network

Coexpression network

GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE26679_WT_GC  view
GSE13739_WT_GO  view
GSE13739_EDS16_GO  view
GSE5686_WT_GO  view
GSE45212_MED14_PSTDC3000_AVRRPT2  view
GSE26679_EDR1_GC  view

Differentially expressed condition

17 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE17464	Laer, control	Laer, PstDC3000 12 h	2.61	3.53E-06
GSE17464	Penta, control	Penta, PstDC3000 12 h	3.98	3.29E-11
GSE18978	Col, WT, control 24 h	Col, WT, PsmES4326 24 h	-3.67	9.47E-10
GSE26679	Col, WT, GC 0 h	Col, WT, GC 18 h	1.98	1.45E-10
GSE26679	Col, edr1, GC 0 h	Col, edr1, GC 18 h	2.00	1.06E-10
GSE37269	Ei2, WT, control	Ei2, WT, TEV 21 d	-2.56	1.01E-03
GSE40544	Col, WT, control	Col, WT, PstDC3000 AvrRpt2	-1.53	4.68E-06
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 12 h	-1.88	1.88E-08
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 4 h	-1.61	3.31E-07
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 8 h	-1.81	3.70E-08
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 4 h	-2.19	2.45E-09
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 8 h	-1.60	1.72E-07
GSE45214	Col, med16, PstDC3000 AvrRpt2 0 h	Col, med16, PstDC3000 AvrRpt2 4 h	-1.54	2.92E-10
GSE56094	Col, WT, control 10 h	Col, WT, hrpA- 10 h	-1.64	6.63E-04
GSE56094	Col, WT, control 11 h	Col, WT, hrpA- 11 h	-1.67	4.67E-04
GSE56094	Col, WT, control 7 h	Col, WT, PstDC3000 7 h	1.70	5.28E-04
GSE6556	Col, gh3.5, control	Col, gh3.5, PstDC3000 AvrRpt2 48 h	-3.15	1.80E-06