gene detail

Gene description

TAIR ID: AT2G27040

Short description: Argonaute family protein

Pathogen responsiveness: -0.46

General responsiveness: -2.45

Orthologous

Rice:

OS04G0151800

Maize:

GRMZM2G589579

Wheat:

TA.27352.1.S1_AT

GO biological process

chromatin silencing, production of siRNA involved in RNA interference, DNA methylation, chromatin silencing by small RNA, transcription, DNA-templated, defense response to virus, histone H3-K9 methylation, regulation of translation, gene silencing, defense response to bacterium, incompatible interaction, modulation by virus of host morphology or physiology

GO cellular component

nucleolus, nucleoplasm, nucleus, Cajal body, intracellular ribonucleoprotein complex, nuclear euchromatin

GO molecular function

protein binding, endoribonuclease activity, chromatin binding

Protein domain

Pfam	PF16486, N-terminal domain of argonaute
Pfam	PF08699, Argonaute linker 1 domain
Pfam	PF02170, PAZ domain
Pfam	PF16488, Argonaute linker 2 domain
Pfam	PF02171, Piwi domain
Pfam	PF16487, Mid domain of argonaute
SMART	SM00950, Piwi
SMART	SM01163, DUF1785

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

Not involved in KEGG pathway

Transcriptional regulation

Regulator:
AT3G24050, AT4G34680, AT2G45050, AT3G60530

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 7

click to view PPI network

Coexpression network

GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE56094_WT_HRPA-  view
GSE13739_WT_GO  view
GSE13739_EDS16_GO  view
GSE5686_WT_GO  view
GSE56094_WT_PSTDC3000  view
GSE45212_MED14_PSTDC3000_AVRRPT2  view

Differentially expressed condition

17 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE11807	Col, erf104 ko, water 4 h	Col, erf104 ko, Flg22 4 h	-1.57	4.81E-02
GSE17500	Col, 35S:AFB1, control 0 h	Col, 35S:AFB1, PstDC3000 24 h	-1.90	1.36E-05
GSE17500	Col, WT, control 0 h	Col, WT, PstDC3000 24 h	-2.26	1.55E-06
GSE17500	Col, miR393, control 0 h	Col, miR393, PstDC3000 24 h	-1.86	1.33E-05
GSE18978	Col, WT, control 24 h	Col, WT, PsmES4326 24 h	-2.57	7.53E-11
GSE37269	Ei2, WT, control	Ei2, WT, TEV 21 d	-1.92	4.33E-03
GSE40544	Col, WT, control	Col, WT, PstDC3000 AvrRpt2	-1.61	6.48E-04
GSE40544	Col, WT, control	Col, WT, PstDC3000 EV	-2.04	6.20E-05
GSE40544	Col, Sid2, control	Col, Sid2, PstDC3000 AvrRpt2	-1.55	9.58E-04
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 12 h	-1.93	7.11E-14
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 8 h	-1.76	4.03E-13
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 8 h	-1.52	1.90E-12
GSE45214	Col, med16, PstDC3000 AvrRpt2 0 h	Col, med16, PstDC3000 AvrRpt2 4 h	-1.58	2.52E-09
GSE50526	Col, WT, mock 24 h	Col, WT, A. brassicicola 24 h	-1.69	3.89E-04
GSE5520	Col, WT, control 10 h	Col, WT, Cor- 10 h	-1.87	9.68E-06
GSE5520	Col, WT, control 24 h	Col, WT, PstDC3000 24 h	-1.62	1.48E-04
GSE6556	Col, gh3.5, control	Col, gh3.5, PstDC3000 AvrRpt2 48 h	-1.87	1.47E-02