co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G27040

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006399: tRNA metabolic process	0.00E+00
2	GO:0008064: regulation of actin polymerization or depolymerization	0.00E+00
3	GO:0070125: mitochondrial translational elongation	0.00E+00
4	GO:0051493: regulation of cytoskeleton organization	0.00E+00
5	GO:0002184: cytoplasmic translational termination	0.00E+00
6	GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation	0.00E+00
7	GO:0006428: isoleucyl-tRNA aminoacylation	0.00E+00
8	GO:0016553: base conversion or substitution editing	0.00E+00
9	GO:0006412: translation	8.39E-12
10	GO:0032544: plastid translation	8.18E-07
11	GO:0009658: chloroplast organization	2.70E-05
12	GO:0042254: ribosome biogenesis	2.82E-05
13	GO:0006353: DNA-templated transcription, termination	5.89E-05
14	GO:0010027: thylakoid membrane organization	8.01E-05
15	GO:0043489: RNA stabilization	1.02E-04
16	GO:0006430: lysyl-tRNA aminoacylation	1.02E-04
17	GO:0048481: plant ovule development	1.19E-04
18	GO:0006568: tryptophan metabolic process	2.40E-04
19	GO:0010270: photosystem II oxygen evolving complex assembly	2.40E-04
20	GO:0006695: cholesterol biosynthetic process	2.40E-04
21	GO:0034755: iron ion transmembrane transport	2.40E-04
22	GO:0006418: tRNA aminoacylation for protein translation	3.67E-04
23	GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition	3.99E-04
24	GO:0006421: asparaginyl-tRNA aminoacylation	3.99E-04
25	GO:0006424: glutamyl-tRNA aminoacylation	5.73E-04
26	GO:2001141: regulation of RNA biosynthetic process	5.73E-04
27	GO:0010239: chloroplast mRNA processing	5.73E-04
28	GO:0000413: protein peptidyl-prolyl isomerization	6.09E-04
29	GO:0006021: inositol biosynthetic process	7.62E-04
30	GO:0009790: embryo development	8.90E-04
31	GO:0032543: mitochondrial translation	9.62E-04
32	GO:0006564: L-serine biosynthetic process	9.62E-04
33	GO:0010236: plastoquinone biosynthetic process	9.62E-04
34	GO:0045038: protein import into chloroplast thylakoid membrane	9.62E-04
35	GO:0048359: mucilage metabolic process involved in seed coat development	9.62E-04
36	GO:0042549: photosystem II stabilization	1.17E-03
37	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	1.17E-03
38	GO:0000470: maturation of LSU-rRNA	1.17E-03
39	GO:0006828: manganese ion transport	1.17E-03
40	GO:0015995: chlorophyll biosynthetic process	1.33E-03
41	GO:0010189: vitamin E biosynthetic process	1.40E-03
42	GO:1901259: chloroplast rRNA processing	1.40E-03
43	GO:0009817: defense response to fungus, incompatible interaction	1.47E-03
44	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	1.65E-03
45	GO:0000105: histidine biosynthetic process	1.90E-03
46	GO:0048564: photosystem I assembly	1.90E-03
47	GO:0045292: mRNA cis splicing, via spliceosome	1.90E-03
48	GO:0010928: regulation of auxin mediated signaling pathway	1.90E-03
49	GO:0042255: ribosome assembly	1.90E-03
50	GO:0071482: cellular response to light stimulus	2.17E-03
51	GO:0033384: geranyl diphosphate biosynthetic process	2.45E-03
52	GO:0006783: heme biosynthetic process	2.45E-03
53	GO:0000373: Group II intron splicing	2.45E-03
54	GO:0015780: nucleotide-sugar transport	2.45E-03
55	GO:0045337: farnesyl diphosphate biosynthetic process	2.45E-03
56	GO:0006457: protein folding	2.49E-03
57	GO:0006779: porphyrin-containing compound biosynthetic process	2.74E-03
58	GO:0048829: root cap development	3.05E-03
59	GO:0006782: protoporphyrinogen IX biosynthetic process	3.05E-03
60	GO:0045454: cell redox homeostasis	3.10E-03
61	GO:0006879: cellular iron ion homeostasis	3.36E-03
62	GO:0006352: DNA-templated transcription, initiation	3.36E-03
63	GO:0018119: peptidyl-cysteine S-nitrosylation	3.36E-03
64	GO:0006816: calcium ion transport	3.36E-03
65	GO:0009073: aromatic amino acid family biosynthetic process	3.36E-03
66	GO:0006790: sulfur compound metabolic process	3.69E-03
67	GO:0010588: cotyledon vascular tissue pattern formation	4.02E-03
68	GO:0010207: photosystem II assembly	4.37E-03
69	GO:0009624: response to nematode	4.52E-03
70	GO:0046854: phosphatidylinositol phosphorylation	4.72E-03
71	GO:0009793: embryo development ending in seed dormancy	4.89E-03
72	GO:0042742: defense response to bacterium	4.91E-03
73	GO:0000027: ribosomal large subunit assembly	5.46E-03
74	GO:0008299: isoprenoid biosynthetic process	5.85E-03
75	GO:0007017: microtubule-based process	5.85E-03
76	GO:0003333: amino acid transmembrane transport	6.24E-03
77	GO:0006633: fatty acid biosynthetic process	7.10E-03
78	GO:0009306: protein secretion	7.48E-03
79	GO:0009735: response to cytokinin	7.48E-03
80	GO:0019722: calcium-mediated signaling	7.48E-03
81	GO:0009451: RNA modification	7.99E-03
82	GO:0008033: tRNA processing	8.35E-03
83	GO:0008360: regulation of cell shape	8.80E-03
84	GO:0009958: positive gravitropism	8.80E-03
85	GO:0007018: microtubule-based movement	9.26E-03
86	GO:0006814: sodium ion transport	9.26E-03
87	GO:0032502: developmental process	1.07E-02
88	GO:0007264: small GTPase mediated signal transduction	1.07E-02
89	GO:0007267: cell-cell signaling	1.22E-02
90	GO:0071805: potassium ion transmembrane transport	1.22E-02
91	GO:0009631: cold acclimation	1.77E-02
92	GO:0006865: amino acid transport	1.83E-02
93	GO:0009637: response to blue light	1.89E-02
94	GO:0045087: innate immune response	1.89E-02
95	GO:0006629: lipid metabolic process	2.22E-02
96	GO:0010114: response to red light	2.26E-02
97	GO:0008643: carbohydrate transport	2.39E-02
98	GO:0015031: protein transport	2.77E-02
99	GO:0006364: rRNA processing	2.80E-02
100	GO:0006813: potassium ion transport	2.80E-02
101	GO:0009409: response to cold	2.99E-02
102	GO:0009734: auxin-activated signaling pathway	3.13E-02
103	GO:0006396: RNA processing	3.67E-02
104	GO:0009058: biosynthetic process	4.38E-02

Rank	GO Term	Adjusted P value
1	GO:0047661: amino-acid racemase activity	0.00E+00
2	GO:0052834: inositol monophosphate phosphatase activity	0.00E+00
3	GO:0005048: signal sequence binding	0.00E+00
4	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
5	GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity	0.00E+00
6	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	0.00E+00
7	GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity	0.00E+00
8	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
9	GO:0004822: isoleucine-tRNA ligase activity	0.00E+00
10	GO:0004401: histidinol-phosphatase activity	0.00E+00
11	GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity	0.00E+00
12	GO:0019843: rRNA binding	1.21E-17
13	GO:0003735: structural constituent of ribosome	2.34E-11
14	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.53E-08
15	GO:0051920: peroxiredoxin activity	2.18E-07
16	GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity	5.49E-07
17	GO:0016209: antioxidant activity	5.54E-07
18	GO:0010347: L-galactose-1-phosphate phosphatase activity	1.02E-04
19	GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity	1.02E-04
20	GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity	1.02E-04
21	GO:0004425: indole-3-glycerol-phosphate synthase activity	1.02E-04
22	GO:0004824: lysine-tRNA ligase activity	1.02E-04
23	GO:0004655: porphobilinogen synthase activity	1.02E-04
24	GO:0008266: poly(U) RNA binding	2.37E-04
25	GO:0004617: phosphoglycerate dehydrogenase activity	2.40E-04
26	GO:0052832: inositol monophosphate 3-phosphatase activity	2.40E-04
27	GO:0008934: inositol monophosphate 1-phosphatase activity	2.40E-04
28	GO:0052833: inositol monophosphate 4-phosphatase activity	2.40E-04
29	GO:0005528: FK506 binding	3.32E-04
30	GO:0004816: asparagine-tRNA ligase activity	3.99E-04
31	GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity	3.99E-04
32	GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity	3.99E-04
33	GO:0002161: aminoacyl-tRNA editing activity	3.99E-04
34	GO:0004148: dihydrolipoyl dehydrogenase activity	3.99E-04
35	GO:0004812: aminoacyl-tRNA ligase activity	5.65E-04
36	GO:0043023: ribosomal large subunit binding	5.73E-04
37	GO:0008097: 5S rRNA binding	5.73E-04
38	GO:0008508: bile acid:sodium symporter activity	5.73E-04
39	GO:0001053: plastid sigma factor activity	7.62E-04
40	GO:0016836: hydro-lyase activity	7.62E-04
41	GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed	7.62E-04
42	GO:0016987: sigma factor activity	7.62E-04
43	GO:0016773: phosphotransferase activity, alcohol group as acceptor	9.62E-04
44	GO:0004040: amidase activity	9.62E-04
45	GO:0008237: metallopeptidase activity	1.02E-03
46	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	1.40E-03
47	GO:0003746: translation elongation factor activity	1.85E-03
48	GO:0004601: peroxidase activity	1.88E-03
49	GO:0008312: 7S RNA binding	1.90E-03
50	GO:0004033: aldo-keto reductase (NADP) activity	1.90E-03
51	GO:0004337: geranyltranstransferase activity	2.45E-03
52	GO:0047617: acyl-CoA hydrolase activity	2.74E-03
53	GO:0005381: iron ion transmembrane transporter activity	2.74E-03
54	GO:0005384: manganese ion transmembrane transporter activity	2.74E-03
55	GO:0004161: dimethylallyltranstransferase activity	3.36E-03
56	GO:0005089: Rho guanyl-nucleotide exchange factor activity	3.36E-03
57	GO:0000049: tRNA binding	3.69E-03
58	GO:0008081: phosphoric diester hydrolase activity	4.02E-03
59	GO:0015095: magnesium ion transmembrane transporter activity	4.02E-03
60	GO:0005215: transporter activity	5.72E-03
61	GO:0015079: potassium ion transmembrane transporter activity	5.85E-03
62	GO:0004176: ATP-dependent peptidase activity	6.24E-03
63	GO:0003727: single-stranded RNA binding	7.48E-03
64	GO:0008514: organic anion transmembrane transporter activity	7.48E-03
65	GO:0008080: N-acetyltransferase activity	8.80E-03
66	GO:0003729: mRNA binding	8.97E-03
67	GO:0000287: magnesium ion binding	1.19E-02
68	GO:0005200: structural constituent of cytoskeleton	1.22E-02
69	GO:0016597: amino acid binding	1.27E-02
70	GO:0008236: serine-type peptidase activity	1.54E-02
71	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	1.54E-02
72	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	1.60E-02
73	GO:0004222: metalloendopeptidase activity	1.71E-02
74	GO:0003924: GTPase activity	2.22E-02
75	GO:0043621: protein self-association	2.39E-02
76	GO:0015293: symporter activity	2.46E-02
77	GO:0051287: NAD binding	2.59E-02
78	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	2.80E-02
79	GO:0003690: double-stranded DNA binding	2.86E-02
80	GO:0003777: microtubule motor activity	3.01E-02
81	GO:0015171: amino acid transmembrane transporter activity	3.01E-02
82	GO:0016887: ATPase activity	3.44E-02
83	GO:0003779: actin binding	3.52E-02
84	GO:0003723: RNA binding	3.91E-02
85	GO:0004252: serine-type endopeptidase activity	4.54E-02

Rank	GO Term	Adjusted P value
1	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	0.00E+00
2	GO:0070971: endoplasmic reticulum exit site	0.00E+00
3	GO:0009570: chloroplast stroma	1.93E-38
4	GO:0009507: chloroplast	2.62E-36
5	GO:0009941: chloroplast envelope	2.12E-27
6	GO:0005840: ribosome	1.26E-10
7	GO:0009579: thylakoid	3.67E-08
8	GO:0009534: chloroplast thylakoid	3.84E-08
9	GO:0009543: chloroplast thylakoid lumen	1.54E-07
10	GO:0009535: chloroplast thylakoid membrane	1.07E-06
11	GO:0000311: plastid large ribosomal subunit	3.63E-06
12	GO:0031977: thylakoid lumen	1.12E-05
13	GO:0009547: plastid ribosome	1.02E-04
14	GO:0016020: membrane	1.99E-04
15	GO:0080085: signal recognition particle, chloroplast targeting	2.40E-04
16	GO:0022625: cytosolic large ribosomal subunit	4.24E-04
17	GO:0009536: plastid	1.61E-03
18	GO:0009533: chloroplast stromal thylakoid	1.65E-03
19	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	2.17E-03
20	GO:0045298: tubulin complex	2.45E-03
21	GO:0031969: chloroplast membrane	2.47E-03
22	GO:0005739: mitochondrion	4.10E-03
23	GO:0000312: plastid small ribosomal subunit	4.37E-03
24	GO:0009706: chloroplast inner membrane	4.52E-03
25	GO:0005875: microtubule associated complex	5.09E-03
26	GO:0042651: thylakoid membrane	5.85E-03
27	GO:0005871: kinesin complex	7.91E-03
28	GO:0022626: cytosolic ribosome	7.92E-03
29	GO:0019898: extrinsic component of membrane	9.73E-03
30	GO:0046658: anchored component of plasma membrane	1.03E-02
31	GO:0010319: stromule	1.22E-02
32	GO:0030529: intracellular ribonucleoprotein complex	1.32E-02
33	GO:0009505: plant-type cell wall	2.72E-02
34	GO:0005618: cell wall	3.85E-02
35	GO:0010287: plastoglobule	4.06E-02
36	GO:0005759: mitochondrial matrix	4.95E-02