gene detail

Gene description

TAIR ID: AT2G26250

Short description: 3-ketoacyl-CoA synthase 10

Pathogen responsiveness: -0.13

General responsiveness: 0.39

Orthologous

Rice: No orthologous gene

Maize:

GRMZM2G445602

Wheat: No orthologous gene

GO biological process

response to cold, response to light stimulus, response to karrikin, lipid biosynthetic process, fatty acid biosynthetic process, very long-chain fatty acid metabolic process, epidermal cell differentiation, oxidation-reduction process, cuticle development

GO cellular component

endoplasmic reticulum membrane, endoplasmic reticulum, membrane, nucleus, mitochondrion, integral component of membrane

GO molecular function

formate dehydrogenase (NAD+) activity, very-long-chain 3-ketoacyl-CoA synthase activity, NAD binding, transferase activity, transferring acyl groups, 3-oxo-lignoceronyl-CoA synthase activity, 3-oxo-arachidoyl-CoA synthase activity, 3-oxo-cerotoyl-CoA synthase activity, oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor

Protein domain

Pfam	PF08392, FAE1/Type III polyketide synthase-like protein
Pfam	PF08541, 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

PATH:ath00062: Fatty acid elongation
PATH:ath04626: Plant-pathogen interaction

Transcriptional regulation

Regulator:
AT3G27920, AT3G28910, AT1G24260, AT5G41315

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 2

click to view PPI network

Coexpression network

GSE56094_WT_HRPA-  view
GSE13739_WT_GO  view
GSE13739_EDS16_GO  view
GSE5686_WT_GO  view
GSE56094_WT_PSTDC3000  view

Differentially expressed condition

22 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE13739	Col, WT, control 7 d	Col, WT, G.orontii 7 d	-1.58	3.41E-14
GSE17500	Col, WT, control 0 h	Col, WT, PstDC3000 24 h	-1.58	7.78E-04
GSE17500	Col, miR393, control 0 h	Col, miR393, PstDC3000 24 h	-1.59	9.24E-04
GSE18978	Col, WT, control 24 h	Col, WT, PsmES4326 24 h	-3.69	6.44E-09
GSE37269	Ei2, WT, control	Ei2, WT, TEV 21 d	-2.16	7.41E-04
GSE37269	St0, WT, control	St0, WT, TEV 21 d	-1.67	5.09E-03
GSE40544	Col, WT, control	Col, WT, PstDC3000 AvrRpt2	-1.53	2.13E-03
GSE40544	Col, Sid2, control	Col, Sid2, PstDC3000 AvrRpt2	-1.52	2.32E-03
GSE5520	Col, WT, control 10 h	Col, WT, Cor- 10 h	-1.79	3.13E-03
GSE5520	Col, WT, control 24 h	Col, WT, PstDC3000 24 h	-1.80	7.15E-03
GSE5520	Col, WT, control 7 h	Col, WT, PstDC3000 7 h	-2.09	8.55E-05
GSE56094	Col, WT, control 10 h	Col, WT, PstDC3000 10 h	-2.68	1.14E-14
GSE56094	Col, WT, control 10 h	Col, WT, hrpA- 10 h	-1.73	5.84E-07
GSE56094	Col, WT, control 11 h	Col, WT, PstDC3000 11 h	-2.18	1.21E-10
GSE56094	Col, WT, control 11 h	Col, WT, hrpA- 11 h	-1.84	1.06E-07
GSE56094	Col, WT, control 12 h	Col, WT, PstDC3000 12 h	-2.14	2.37E-10
GSE56094	Col, WT, control 13 h	Col, WT, PstDC3000 13 h	-2.17	9.52E-11
GSE56094	Col, WT, control 8 h	Col, WT, hrpA- 8 h	-1.63	2.13E-06
GSE56094	Col, WT, control 9 h	Col, WT, PstDC3000 9 h	-1.78	1.10E-07
GSE56094	Col, WT, control 9 h	Col, WT, hrpA- 9 h	-1.80	2.96E-07
GSE58954	Col, WT, Psm AvrRpt2 0 h	Col, WT, Psm AvrRpt2 6 h	-1.59	5.08E-03
GSE6176	Col, WT, control 12 h	Col, WT, PstDC3000 12 h	-1.56	1.32E-03