Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT2G26250

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0006066: alcohol metabolic process0.00E+00
2GO:0045176: apical protein localization0.00E+00
3GO:0033494: ferulate metabolic process0.00E+00
4GO:0090470: shoot organ boundary specification0.00E+00
5GO:0042493: response to drug0.00E+00
6GO:0009773: photosynthetic electron transport in photosystem I2.53E-10
7GO:0015979: photosynthesis1.43E-06
8GO:0042335: cuticle development3.00E-05
9GO:0034220: ion transmembrane transport3.00E-05
10GO:0080170: hydrogen peroxide transmembrane transport4.86E-05
11GO:0006810: transport8.30E-05
12GO:0009735: response to cytokinin1.41E-04
13GO:0006833: water transport1.52E-04
14GO:0016042: lipid catabolic process1.72E-04
15GO:0010196: nonphotochemical quenching3.37E-04
16GO:0090548: response to nitrate starvation3.75E-04
17GO:0034337: RNA folding3.75E-04
18GO:0005991: trehalose metabolic process3.75E-04
19GO:0071596: ubiquitin-dependent protein catabolic process via the N-end rule pathway3.75E-04
20GO:0071588: hydrogen peroxide mediated signaling pathway3.75E-04
21GO:0010729: positive regulation of hydrogen peroxide biosynthetic process3.75E-04
22GO:1902025: nitrate import3.75E-04
23GO:0000481: maturation of 5S rRNA3.75E-04
24GO:0071277: cellular response to calcium ion3.75E-04
25GO:0080051: cutin transport3.75E-04
26GO:0033481: galacturonate biosynthetic process3.75E-04
27GO:0006106: fumarate metabolic process3.75E-04
28GO:0006869: lipid transport6.38E-04
29GO:0009416: response to light stimulus7.14E-04
30GO:0010205: photoinhibition7.31E-04
31GO:0010024: phytochromobilin biosynthetic process8.15E-04
32GO:0043255: regulation of carbohydrate biosynthetic process8.15E-04
33GO:0010115: regulation of abscisic acid biosynthetic process8.15E-04
34GO:0015908: fatty acid transport8.15E-04
35GO:1900033: negative regulation of trichome patterning8.15E-04
36GO:0001736: establishment of planar polarity8.15E-04
37GO:0010229: inflorescence development1.27E-03
38GO:0015714: phosphoenolpyruvate transport1.32E-03
39GO:0090391: granum assembly1.32E-03
40GO:0006518: peptide metabolic process1.32E-03
41GO:0006788: heme oxidation1.32E-03
42GO:0010143: cutin biosynthetic process1.43E-03
43GO:0010167: response to nitrate1.60E-03
44GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway1.67E-03
45GO:0010025: wax biosynthetic process1.78E-03
46GO:0006636: unsaturated fatty acid biosynthetic process1.78E-03
47GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly1.91E-03
48GO:0010371: regulation of gibberellin biosynthetic process1.91E-03
49GO:0051639: actin filament network formation1.91E-03
50GO:0009152: purine ribonucleotide biosynthetic process1.91E-03
51GO:0046653: tetrahydrofolate metabolic process1.91E-03
52GO:0009800: cinnamic acid biosynthetic process1.91E-03
53GO:0009650: UV protection1.91E-03
54GO:1901332: negative regulation of lateral root development1.91E-03
55GO:0031408: oxylipin biosynthetic process2.39E-03
56GO:0016998: cell wall macromolecule catabolic process2.39E-03
57GO:0010222: stem vascular tissue pattern formation2.56E-03
58GO:0048629: trichome patterning2.56E-03
59GO:0010109: regulation of photosynthesis2.56E-03
60GO:0015976: carbon utilization2.56E-03
61GO:0051764: actin crosslink formation2.56E-03
62GO:2000122: negative regulation of stomatal complex development2.56E-03
63GO:0030104: water homeostasis2.56E-03
64GO:0006183: GTP biosynthetic process2.56E-03
65GO:0045727: positive regulation of translation2.56E-03
66GO:0015994: chlorophyll metabolic process2.56E-03
67GO:0006546: glycine catabolic process2.56E-03
68GO:0015713: phosphoglycerate transport2.56E-03
69GO:0010037: response to carbon dioxide2.56E-03
70GO:0009651: response to salt stress3.10E-03
71GO:0006461: protein complex assembly3.28E-03
72GO:0009107: lipoate biosynthetic process3.28E-03
73GO:0006564: L-serine biosynthetic process3.28E-03
74GO:0016120: carotene biosynthetic process3.28E-03
75GO:0006656: phosphatidylcholine biosynthetic process3.28E-03
76GO:0010236: plastoquinone biosynthetic process3.28E-03
77GO:0071555: cell wall organization3.35E-03
78GO:0010182: sugar mediated signaling pathway3.92E-03
79GO:0010405: arabinogalactan protein metabolic process4.05E-03
80GO:0048827: phyllome development4.05E-03
81GO:0042549: photosystem II stabilization4.05E-03
82GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway4.05E-03
83GO:0006086: acetyl-CoA biosynthetic process from pyruvate4.05E-03
84GO:0010337: regulation of salicylic acid metabolic process4.05E-03
85GO:0006559: L-phenylalanine catabolic process4.05E-03
86GO:0018258: protein O-linked glycosylation via hydroxyproline4.05E-03
87GO:0006561: proline biosynthetic process4.05E-03
88GO:0010019: chloroplast-nucleus signaling pathway4.88E-03
89GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity4.88E-03
90GO:0006694: steroid biosynthetic process4.88E-03
91GO:0010189: vitamin E biosynthetic process4.88E-03
92GO:0009395: phospholipid catabolic process5.77E-03
93GO:0009772: photosynthetic electron transport in photosystem II5.77E-03
94GO:1900057: positive regulation of leaf senescence5.77E-03
95GO:0010444: guard mother cell differentiation5.77E-03
96GO:0050829: defense response to Gram-negative bacterium5.77E-03
97GO:0055075: potassium ion homeostasis6.70E-03
98GO:0016559: peroxisome fission6.70E-03
99GO:0030091: protein repair6.70E-03
100GO:0006605: protein targeting6.70E-03
101GO:0009704: de-etiolation6.70E-03
102GO:0032508: DNA duplex unwinding6.70E-03
103GO:0046620: regulation of organ growth6.70E-03
104GO:0070413: trehalose metabolism in response to stress6.70E-03
105GO:0031540: regulation of anthocyanin biosynthetic process6.70E-03
106GO:0010027: thylakoid membrane organization7.02E-03
107GO:0009808: lignin metabolic process7.69E-03
108GO:0009827: plant-type cell wall modification7.69E-03
109GO:0009657: plastid organization7.69E-03
110GO:0032544: plastid translation7.69E-03
111GO:0042128: nitrate assimilation7.84E-03
112GO:0010411: xyloglucan metabolic process8.27E-03
113GO:0015995: chlorophyll biosynthetic process8.27E-03
114GO:0090305: nucleic acid phosphodiester bond hydrolysis8.73E-03
115GO:0034765: regulation of ion transmembrane transport8.73E-03
116GO:0090333: regulation of stomatal closure8.73E-03
117GO:0000373: Group II intron splicing8.73E-03
118GO:0030244: cellulose biosynthetic process9.17E-03
119GO:0018298: protein-chromophore linkage9.17E-03
120GO:0010311: lateral root formation9.64E-03
121GO:0009638: phototropism9.82E-03
122GO:0009834: plant-type secondary cell wall biogenesis1.01E-02
123GO:0006633: fatty acid biosynthetic process1.01E-02
124GO:0009631: cold acclimation1.06E-02
125GO:0006032: chitin catabolic process1.10E-02
126GO:0009688: abscisic acid biosynthetic process1.10E-02
127GO:0048829: root cap development1.10E-02
128GO:0006865: amino acid transport1.11E-02
129GO:0032259: methylation1.11E-02
130GO:0007623: circadian rhythm1.14E-02
131GO:0000038: very long-chain fatty acid metabolic process1.21E-02
132GO:0008285: negative regulation of cell proliferation1.21E-02
133GO:0009750: response to fructose1.21E-02
134GO:0048765: root hair cell differentiation1.21E-02
135GO:0015706: nitrate transport1.34E-02
136GO:0016024: CDP-diacylglycerol biosynthetic process1.34E-02
137GO:0009718: anthocyanin-containing compound biosynthetic process1.46E-02
138GO:0009725: response to hormone1.46E-02
139GO:0010588: cotyledon vascular tissue pattern formation1.46E-02
140GO:0010628: positive regulation of gene expression1.46E-02
141GO:0010102: lateral root morphogenesis1.46E-02
142GO:0006108: malate metabolic process1.46E-02
143GO:0006006: glucose metabolic process1.46E-02
144GO:0009926: auxin polar transport1.51E-02
145GO:0042546: cell wall biogenesis1.57E-02
146GO:0010540: basipetal auxin transport1.59E-02
147GO:0048467: gynoecium development1.59E-02
148GO:0010020: chloroplast fission1.59E-02
149GO:0019253: reductive pentose-phosphate cycle1.59E-02
150GO:0009737: response to abscisic acid1.69E-02
151GO:0010053: root epidermal cell differentiation1.73E-02
152GO:0009225: nucleotide-sugar metabolic process1.73E-02
153GO:0009825: multidimensional cell growth1.73E-02
154GO:0071732: cellular response to nitric oxide1.73E-02
155GO:0010030: positive regulation of seed germination1.73E-02
156GO:0009409: response to cold1.80E-02
157GO:0019762: glucosinolate catabolic process1.87E-02
158GO:0042023: DNA endoreduplication1.87E-02
159GO:0005992: trehalose biosynthetic process2.01E-02
160GO:0006487: protein N-linked glycosylation2.01E-02
161GO:0080147: root hair cell development2.01E-02
162GO:0000027: ribosomal large subunit assembly2.01E-02
163GO:0051017: actin filament bundle assembly2.01E-02
164GO:0009809: lignin biosynthetic process2.03E-02
165GO:0010073: meristem maintenance2.15E-02
166GO:0019953: sexual reproduction2.15E-02
167GO:0009695: jasmonic acid biosynthetic process2.15E-02
168GO:0009768: photosynthesis, light harvesting in photosystem I2.15E-02
169GO:0007017: microtubule-based process2.15E-02
170GO:0006857: oligopeptide transport2.18E-02
171GO:0009269: response to desiccation2.30E-02
172GO:0003333: amino acid transmembrane transport2.30E-02
173GO:0006096: glycolytic process2.41E-02
174GO:0030245: cellulose catabolic process2.46E-02
175GO:0010227: floral organ abscission2.62E-02
176GO:0009411: response to UV2.62E-02
177GO:0071369: cellular response to ethylene stimulus2.62E-02
178GO:0009414: response to water deprivation2.75E-02
179GO:0042127: regulation of cell proliferation2.78E-02
180GO:0009306: protein secretion2.78E-02
181GO:0009624: response to nematode2.90E-02
182GO:0009789: positive regulation of abscisic acid-activated signaling pathway2.94E-02
183GO:0051726: regulation of cell cycle3.07E-02
184GO:0009742: brassinosteroid mediated signaling pathway3.07E-02
185GO:0042631: cellular response to water deprivation3.11E-02
186GO:0042391: regulation of membrane potential3.11E-02
187GO:0000413: protein peptidyl-prolyl isomerization3.11E-02
188GO:0009741: response to brassinosteroid3.28E-02
189GO:0009958: positive gravitropism3.28E-02
190GO:0045489: pectin biosynthetic process3.28E-02
191GO:0048544: recognition of pollen3.45E-02
192GO:0015986: ATP synthesis coupled proton transport3.45E-02
193GO:0009733: response to auxin3.47E-02
194GO:0048825: cotyledon development3.63E-02
195GO:0016132: brassinosteroid biosynthetic process3.81E-02
196GO:0000302: response to reactive oxygen species3.81E-02
197GO:0071554: cell wall organization or biogenesis3.81E-02
198GO:0002229: defense response to oomycetes3.81E-02
199GO:0055085: transmembrane transport3.95E-02
200GO:0007165: signal transduction4.00E-02
201GO:0042744: hydrogen peroxide catabolic process4.12E-02
202GO:0071281: cellular response to iron ion4.17E-02
203GO:0006629: lipid metabolic process4.20E-02
204GO:0009408: response to heat4.20E-02
205GO:0010252: auxin homeostasis4.36E-02
206GO:0071805: potassium ion transmembrane transport4.55E-02
207GO:0016126: sterol biosynthetic process4.94E-02
208GO:0009911: positive regulation of flower development4.94E-02
209GO:0010150: leaf senescence4.98E-02
RankGO TermAdjusted P value
1GO:0019146: arabinose-5-phosphate isomerase activity0.00E+00
2GO:0050614: delta24-sterol reductase activity0.00E+00
3GO:0052667: phosphomethylethanolamine N-methyltransferase activity0.00E+00
4GO:0046577: long-chain-alcohol oxidase activity0.00E+00
5GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity0.00E+00
6GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity0.00E+00
7GO:0010301: xanthoxin dehydrogenase activity0.00E+00
8GO:0090471: 9,15,9'-tri-cis-zeta-carotene isomerase activity0.00E+00
9GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity0.00E+00
10GO:0052689: carboxylic ester hydrolase activity1.20E-05
11GO:0016788: hydrolase activity, acting on ester bonds3.72E-05
12GO:0001872: (1->3)-beta-D-glucan binding4.86E-05
13GO:0015250: water channel activity1.06E-04
14GO:0005528: FK506 binding1.77E-04
15GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity3.75E-04
16GO:0004333: fumarate hydratase activity3.75E-04
17GO:0030794: (S)-coclaurine-N-methyltransferase activity3.75E-04
18GO:0015121: phosphoenolpyruvate:phosphate antiporter activity3.75E-04
19GO:0004321: fatty-acyl-CoA synthase activity3.75E-04
20GO:0019210: kinase inhibitor activity3.75E-04
21GO:0045485: omega-6 fatty acid desaturase activity3.75E-04
22GO:0015245: fatty acid transporter activity3.75E-04
23GO:0003755: peptidyl-prolyl cis-trans isomerase activity4.94E-04
24GO:0047746: chlorophyllase activity8.15E-04
25GO:0004617: phosphoglycerate dehydrogenase activity8.15E-04
26GO:0003938: IMP dehydrogenase activity8.15E-04
27GO:0000234: phosphoethanolamine N-methyltransferase activity8.15E-04
28GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity8.15E-04
29GO:0030247: polysaccharide binding1.16E-03
30GO:0004565: beta-galactosidase activity1.27E-03
31GO:0008864: formyltetrahydrofolate deformylase activity1.32E-03
32GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor1.32E-03
33GO:0050734: hydroxycinnamoyltransferase activity1.32E-03
34GO:0016992: lipoate synthase activity1.32E-03
35GO:0045548: phenylalanine ammonia-lyase activity1.32E-03
36GO:0016742: hydroxymethyl-, formyl- and related transferase activity1.32E-03
37GO:0003825: alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity1.91E-03
38GO:0003830: beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity1.91E-03
39GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity1.91E-03
40GO:0016851: magnesium chelatase activity1.91E-03
41GO:0004871: signal transducer activity2.35E-03
42GO:0004659: prenyltransferase activity2.56E-03
43GO:0010011: auxin binding2.56E-03
44GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor2.56E-03
45GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity2.56E-03
46GO:0010328: auxin influx transmembrane transporter activity2.56E-03
47GO:0050378: UDP-glucuronate 4-epimerase activity2.56E-03
48GO:0052793: pectin acetylesterase activity2.56E-03
49GO:0004506: squalene monooxygenase activity2.56E-03
50GO:0042277: peptide binding2.56E-03
51GO:0004392: heme oxygenase (decyclizing) activity2.56E-03
52GO:0015120: phosphoglycerate transmembrane transporter activity2.56E-03
53GO:0015293: symporter activity2.86E-03
54GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity4.05E-03
55GO:1990714: hydroxyproline O-galactosyltransferase activity4.05E-03
56GO:0004629: phospholipase C activity4.05E-03
57GO:0004130: cytochrome-c peroxidase activity4.05E-03
58GO:0016688: L-ascorbate peroxidase activity4.05E-03
59GO:0004366: glycerol-3-phosphate O-acyltransferase activity4.05E-03
60GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds4.34E-03
61GO:0016762: xyloglucan:xyloglucosyl transferase activity4.84E-03
62GO:0005242: inward rectifier potassium channel activity4.88E-03
63GO:0051753: mannan synthase activity4.88E-03
64GO:0033743: peptide-methionine (R)-S-oxide reductase activity4.88E-03
65GO:0004435: phosphatidylinositol phospholipase C activity4.88E-03
66GO:0004723: calcium-dependent protein serine/threonine phosphatase activity4.88E-03
67GO:0004518: nuclease activity5.18E-03
68GO:0008289: lipid binding5.60E-03
69GO:0016791: phosphatase activity5.88E-03
70GO:0016413: O-acetyltransferase activity6.62E-03
71GO:0016597: amino acid binding6.62E-03
72GO:0052747: sinapyl alcohol dehydrogenase activity6.70E-03
73GO:0016168: chlorophyll binding7.42E-03
74GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water7.69E-03
75GO:0016798: hydrolase activity, acting on glycosyl bonds8.27E-03
76GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors8.73E-03
77GO:0016207: 4-coumarate-CoA ligase activity8.73E-03
78GO:0015112: nitrate transmembrane transporter activity9.82E-03
79GO:0004693: cyclin-dependent protein serine/threonine kinase activity1.01E-02
80GO:0030234: enzyme regulator activity1.10E-02
81GO:0004568: chitinase activity1.10E-02
82GO:0015386: potassium:proton antiporter activity1.21E-02
83GO:0045551: cinnamyl-alcohol dehydrogenase activity1.34E-02
84GO:0004089: carbonate dehydratase activity1.46E-02
85GO:0008081: phosphoric diester hydrolase activity1.46E-02
86GO:0004022: alcohol dehydrogenase (NAD) activity1.46E-02
87GO:0042626: ATPase activity, coupled to transmembrane movement of substances1.54E-02
88GO:0042802: identical protein binding1.54E-02
89GO:0008266: poly(U) RNA binding1.59E-02
90GO:0005516: calmodulin binding1.74E-02
91GO:0051287: NAD binding1.83E-02
92GO:0031409: pigment binding1.87E-02
93GO:0102336: 3-oxo-arachidoyl-CoA synthase activity1.87E-02
94GO:0102337: 3-oxo-cerotoyl-CoA synthase activity1.87E-02
95GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity1.87E-02
96GO:0008168: methyltransferase activity1.89E-02
97GO:0015079: potassium ion transmembrane transporter activity2.15E-02
98GO:0015171: amino acid transmembrane transporter activity2.25E-02
99GO:0004176: ATP-dependent peptidase activity2.30E-02
100GO:0050660: flavin adenine dinucleotide binding2.38E-02
101GO:0022891: substrate-specific transmembrane transporter activity2.62E-02
102GO:0030570: pectate lyase activity2.62E-02
103GO:0008810: cellulase activity2.62E-02
104GO:0008514: organic anion transmembrane transporter activity2.78E-02
105GO:0005102: receptor binding2.94E-02
106GO:0016746: transferase activity, transferring acyl groups2.98E-02
107GO:0005249: voltage-gated potassium channel activity3.11E-02
108GO:0030551: cyclic nucleotide binding3.11E-02
109GO:0046933: proton-transporting ATP synthase activity, rotational mechanism3.28E-02
110GO:0005215: transporter activity3.39E-02
111GO:0050662: coenzyme binding3.45E-02
112GO:0019843: rRNA binding3.62E-02
113GO:0004872: receptor activity3.63E-02
114GO:0019901: protein kinase binding3.63E-02
115GO:0048038: quinone binding3.81E-02
116GO:0051015: actin filament binding4.17E-02
117GO:0000156: phosphorelay response regulator activity4.17E-02
118GO:0030246: carbohydrate binding4.29E-02
119GO:0016722: oxidoreductase activity, oxidizing metal ions4.55E-02
120GO:0005200: structural constituent of cytoskeleton4.55E-02
RankGO TermAdjusted P value
1GO:0010240: plastid pyruvate dehydrogenase complex0.00E+00
2GO:0009535: chloroplast thylakoid membrane9.68E-14
3GO:0009507: chloroplast3.07E-13
4GO:0009579: thylakoid1.82E-10
5GO:0009543: chloroplast thylakoid lumen1.14E-08
6GO:0009534: chloroplast thylakoid2.18E-08
7GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)4.81E-07
8GO:0048046: apoplast7.99E-07
9GO:0009941: chloroplast envelope9.02E-07
10GO:0005886: plasma membrane3.69E-06
11GO:0016021: integral component of membrane1.69E-04
12GO:0031977: thylakoid lumen3.40E-04
13GO:0045239: tricarboxylic acid cycle enzyme complex3.75E-04
14GO:0043674: columella3.75E-04
15GO:0009515: granal stacked thylakoid3.75E-04
16GO:0031225: anchored component of membrane5.78E-04
17GO:0009570: chloroplast stroma6.91E-04
18GO:0046658: anchored component of plasma membrane8.24E-04
19GO:0009897: external side of plasma membrane1.32E-03
20GO:0010007: magnesium chelatase complex1.32E-03
21GO:0030095: chloroplast photosystem II1.43E-03
22GO:0031969: chloroplast membrane1.57E-03
23GO:0015630: microtubule cytoskeleton1.91E-03
24GO:0032432: actin filament bundle1.91E-03
25GO:0005618: cell wall1.98E-03
26GO:0009654: photosystem II oxygen evolving complex2.18E-03
27GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)4.05E-03
28GO:0019898: extrinsic component of membrane4.53E-03
29GO:0009523: photosystem II4.53E-03
30GO:0005887: integral component of plasma membrane5.36E-03
31GO:0009505: plant-type cell wall5.46E-03
32GO:0009533: chloroplast stromal thylakoid5.77E-03
33GO:0042807: central vacuole5.77E-03
34GO:0009986: cell surface5.77E-03
35GO:0010319: stromule6.24E-03
36GO:0010287: plastoglobule7.03E-03
37GO:0008180: COP9 signalosome8.73E-03
38GO:0005576: extracellular region1.12E-02
39GO:0005884: actin filament1.21E-02
40GO:0032040: small-subunit processome1.34E-02
41GO:0030076: light-harvesting complex1.73E-02
42GO:0042651: thylakoid membrane2.15E-02
43GO:0016020: membrane2.65E-02
44GO:0009706: chloroplast inner membrane2.90E-02
45GO:0005770: late endosome3.28E-02
46GO:0009522: photosystem I3.45E-02
47GO:0032580: Golgi cisterna membrane4.36E-02
48GO:0030529: intracellular ribonucleoprotein complex4.94E-02
Gene type



Gene DE type