gene detail

Gene description

TAIR ID: AT2G25850

Short description: poly(A) polymerase 2

Pathogen responsiveness: -1.23

General responsiveness: -2.23

Orthologous

Rice: No orthologous gene

Maize: No orthologous gene

Wheat: No orthologous gene

GO biological process

mRNA polyadenylation, RNA polyadenylation, RNA 3'-end processing

GO cellular component

nucleus, cytoplasm

GO molecular function

protein binding, polynucleotide adenylyltransferase activity, RNA binding, ATP binding, nucleotidyltransferase activity, metal ion binding

Protein domain

Pfam	PF01909, Nucleotidyltransferase domain
Pfam	PF04928, Poly(A) polymerase central domain
Pfam	PF04926, Poly(A) polymerase predicted RNA binding domain

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

PATH:ath03015: mRNA surveillance pathway

Transcriptional regulation

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 6

Coexpression network

Differentially expressed condition

5 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE18978	Col, WT, control 24 h	Col, WT, PsmES4326 24 h	1.78	1.50E-07
GSE26679	Col, WT, GC 0 h	Col, WT, GC 18 h	2.07	2.66E-07
GSE26679	Col, WT, GC 0 h	Col, WT, GC 36 h	2.20	8.77E-08
GSE26679	Col, edr1, GC 0 h	Col, edr1, GC 18 h	1.77	2.60E-06
GSE26679	Col, edr1, GC 0 h	Col, edr1, GC 36 h	2.18	6.59E-08