Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT2G25850

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0035278: miRNA mediated inhibition of translation0.00E+00
2GO:0071902: positive regulation of protein serine/threonine kinase activity3.00E-05
3GO:0090421: embryonic meristem initiation3.00E-05
4GO:1903648: positive regulation of chlorophyll catabolic process3.00E-05
5GO:0080136: priming of cellular response to stress3.00E-05
6GO:0009660: amyloplast organization7.58E-05
7GO:0010506: regulation of autophagy1.32E-04
8GO:0071230: cellular response to amino acid stimulus1.32E-04
9GO:0007032: endosome organization1.32E-04
10GO:0031929: TOR signaling1.32E-04
11GO:2000034: regulation of seed maturation1.32E-04
12GO:2000038: regulation of stomatal complex development2.67E-04
13GO:0042594: response to starvation2.67E-04
14GO:0010188: response to microbial phytotoxin2.67E-04
15GO:0006370: 7-methylguanosine mRNA capping2.67E-04
16GO:0045723: positive regulation of fatty acid biosynthetic process2.67E-04
17GO:0009697: salicylic acid biosynthetic process3.42E-04
18GO:0016558: protein import into peroxisome matrix3.42E-04
19GO:0006751: glutathione catabolic process4.20E-04
20GO:0009959: negative gravitropism4.20E-04
21GO:0009267: cellular response to starvation4.20E-04
22GO:2000037: regulation of stomatal complex patterning5.02E-04
23GO:0010310: regulation of hydrogen peroxide metabolic process5.02E-04
24GO:1900057: positive regulation of leaf senescence5.88E-04
25GO:0000122: negative regulation of transcription from RNA polymerase II promoter5.88E-04
26GO:0006333: chromatin assembly or disassembly5.88E-04
27GO:0030307: positive regulation of cell growth5.88E-04
28GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway5.88E-04
29GO:0006368: transcription elongation from RNA polymerase II promoter5.88E-04
30GO:0009642: response to light intensity6.76E-04
31GO:0010120: camalexin biosynthetic process7.68E-04
32GO:0009880: embryonic pattern specification7.68E-04
33GO:0001708: cell fate specification8.63E-04
34GO:0010048: vernalization response1.06E-03
35GO:0008361: regulation of cell size1.27E-03
36GO:0010229: inflorescence development1.38E-03
37GO:0010030: positive regulation of seed germination1.61E-03
38GO:0007033: vacuole organization1.61E-03
39GO:0010053: root epidermal cell differentiation1.61E-03
40GO:0042023: DNA endoreduplication1.73E-03
41GO:0006470: protein dephosphorylation1.83E-03
42GO:0006366: transcription from RNA polymerase II promoter2.11E-03
43GO:0010091: trichome branching2.52E-03
44GO:0006623: protein targeting to vacuole3.24E-03
45GO:0010183: pollen tube guidance3.24E-03
46GO:0000302: response to reactive oxygen species3.40E-03
47GO:0006635: fatty acid beta-oxidation3.40E-03
48GO:0019760: glucosinolate metabolic process3.87E-03
49GO:0006397: mRNA processing4.66E-03
50GO:0016049: cell growth5.05E-03
51GO:0048481: plant ovule development5.23E-03
52GO:0006897: endocytosis6.94E-03
53GO:0042542: response to hydrogen peroxide7.14E-03
54GO:0031347: regulation of defense response8.38E-03
55GO:0051301: cell division8.62E-03
56GO:0010224: response to UV-B9.25E-03
57GO:0009909: regulation of flower development9.70E-03
58GO:0006417: regulation of translation9.70E-03
59GO:0006457: protein folding1.02E-02
60GO:0009626: plant-type hypersensitive response1.06E-02
61GO:0009620: response to fungus1.09E-02
62GO:0009651: response to salt stress1.23E-02
63GO:0042742: defense response to bacterium1.61E-02
64GO:0010150: leaf senescence1.70E-02
65GO:0010468: regulation of gene expression1.93E-02
66GO:0006355: regulation of transcription, DNA-templated2.26E-02
67GO:0006970: response to osmotic stress2.45E-02
68GO:0009723: response to ethylene2.58E-02
69GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway2.78E-02
70GO:0010200: response to chitin2.78E-02
71GO:0045892: negative regulation of transcription, DNA-templated3.11E-02
72GO:0009737: response to abscisic acid3.43E-02
73GO:0009751: response to salicylic acid3.54E-02
74GO:0048364: root development3.69E-02
75GO:0009793: embryo development ending in seed dormancy3.72E-02
76GO:0016310: phosphorylation3.94E-02
77GO:0016567: protein ubiquitination4.87E-02
RankGO TermAdjusted P value
1GO:0017168: 5-oxoprolinase (ATP-hydrolyzing) activity0.00E+00
2GO:0001047: core promoter binding7.58E-05
3GO:0001078: transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding7.58E-05
4GO:0004484: mRNA guanylyltransferase activity7.58E-05
5GO:0030674: protein binding, bridging6.76E-04
6GO:0005515: protein binding8.49E-04
7GO:0008138: protein tyrosine/serine/threonine phosphatase activity8.63E-04
8GO:0016874: ligase activity9.01E-04
9GO:0031490: chromatin DNA binding9.61E-04
10GO:0000976: transcription regulatory region sequence-specific DNA binding1.27E-03
11GO:0004725: protein tyrosine phosphatase activity1.73E-03
12GO:0004707: MAP kinase activity2.11E-03
13GO:0003682: chromatin binding2.60E-03
14GO:0003713: transcription coactivator activity2.94E-03
15GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity4.03E-03
16GO:0004672: protein kinase activity4.32E-03
17GO:0004222: metalloendopeptidase activity5.60E-03
18GO:0004712: protein serine/threonine/tyrosine kinase activity6.54E-03
19GO:0000166: nucleotide binding7.91E-03
20GO:0004386: helicase activity1.23E-02
21GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding1.49E-02
22GO:0044212: transcription regulatory region DNA binding1.61E-02
23GO:0043565: sequence-specific DNA binding2.10E-02
24GO:0003729: mRNA binding2.40E-02
25GO:0016301: kinase activity2.96E-02
26GO:0004722: protein serine/threonine phosphatase activity3.29E-02
27GO:0003677: DNA binding3.34E-02
28GO:0016887: ATPase activity4.88E-02
RankGO TermAdjusted P value
1GO:0070449: elongin complex0.00E+00
2GO:0031931: TORC1 complex1.32E-04
3GO:0009574: preprophase band1.38E-03
4GO:0005634: nucleus1.95E-03
5GO:0080008: Cul4-RING E3 ubiquitin ligase complex2.70E-03
6GO:0005770: late endosome2.94E-03
7GO:0005778: peroxisomal membrane4.03E-03
8GO:0000932: P-body4.36E-03
9GO:0005834: heterotrimeric G-protein complex1.06E-02
10GO:0005802: trans-Golgi network1.27E-02
11GO:0005654: nucleoplasm1.33E-02
12GO:0005623: cell1.38E-02
13GO:0009524: phragmoplast1.41E-02
14GO:0043231: intracellular membrane-bounded organelle3.83E-02
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Gene type



Gene DE type