gene detail

Gene description

TAIR ID: AT2G20890

Short description: photosystem II reaction center PSB29 protein

Pathogen responsiveness: -0.25

General responsiveness: 1.40

Orthologous

Rice:

OS07G0558500

Maize:

GRMZM2G033493

Wheat: No orthologous gene

GO biological process

photosystem II assembly, protein import into chloroplast thylakoid membrane, regulation of reactive oxygen species biosynthetic process, chlorophyll catabolic process, thylakoid membrane organization, positive regulation of stomatal opening, protein import into chloroplast stroma, regulation of response to water deprivation, G-protein coupled receptor signaling pathway, sugar mediated signaling pathway

GO cellular component

chloroplast stroma, plastid stroma, plastid inner membrane, chloroplast thylakoid membrane, plastid outer membrane, chloroplast outer membrane, chloroplast thylakoid, chloroplast envelope, stromule, integral component of membrane, chloroplast

GO molecular function

protein binding

Protein domain

Pfam	PF11264, Thylakoid formation protein

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

Not involved in KEGG pathway

Transcriptional regulation

Regulator:
AT4G25480, AT4G25490, AT5G05410, AT5G11590, AT5G61850, AT4G25470

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 5

click to view PPI network

Coexpression network

GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE56094_WT_HRPA-  view
GSE13739_WT_GO  view
GSE13739_EDS16_GO  view
GSE5686_WT_GO  view
GSE56094_WT_PSTDC3000  view
GSE45212_MED14_PSTDC3000_AVRRPT2  view

Differentially expressed condition

18 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE11807	Col, erf104 ko, water 4 h	Col, erf104 ko, Flg22 4 h	-1.89	4.76E-02
GSE17500	Col, WT, control 0 h	Col, WT, PstDC3000 24 h	-1.68	7.42E-06
GSE18978	Col, WT, control 24 h	Col, WT, PsmES4326 24 h	-2.59	1.16E-11
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 12 h	-1.80	1.84E-13
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 12 h	-2.30	8.15E-15
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 4 h	-1.93	1.02E-13
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 8 h	-2.43	3.38E-15
GSE5520	Col, WT, control 10 h	Col, WT, Cor- 10 h	-2.53	2.20E-06
GSE5520	Col, WT, control 7 h	Col, WT, PstDC3000 7 h	-2.09	1.25E-06
GSE56094	Col, WT, control 10 h	Col, WT, PstDC3000 10 h	-2.54	8.39E-17
GSE56094	Col, WT, control 11 h	Col, WT, PstDC3000 11 h	-2.02	6.70E-12
GSE56094	Col, WT, control 12 h	Col, WT, PstDC3000 12 h	-1.57	2.95E-08
GSE56094	Col, WT, control 13 h	Col, WT, PstDC3000 13 h	-1.94	1.96E-11
GSE56094	Col, WT, control 6 h	Col, WT, PstDC3000 6 h	-1.75	8.80E-09
GSE56094	Col, WT, control 7 h	Col, WT, PstDC3000 7 h	-1.62	6.79E-08
GSE56094	Col, WT, control 8 h	Col, WT, PstDC3000 8 h	-1.97	2.58E-11
GSE56094	Col, WT, control 9 h	Col, WT, PstDC3000 9 h	-2.07	6.36E-12
GSE6176	Col, WT, control 12 h	Col, WT, PstDC3000 12 h	-1.61	2.73E-07