gene detail

Gene description

TAIR ID: AT2G18940

Short description: Tetratricopeptide repeat (TPR)-like superfamily protein

Pathogen responsiveness: -0.26

General responsiveness: -0.55

Orthologous

Rice:

OS05G0275000 OS07G0590600 OS03G0824100

Maize:

GRMZM2G177169

Wheat: No orthologous gene

GO biological process

biological_process

GO cellular component

mitochondrion, chloroplast

GO molecular function

unkown

Protein domain

Pfam	PF13041, PPR repeat family
Pfam	PF12854, PPR repeat
Pfam	PF13812, Pentatricopeptide repeat domain
Pfam	PF01535, PPR repeat

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

Not involved in KEGG pathway

Transcriptional regulation

Regulator:
AT3G24050, AT1G24260

Target:
none

Protein-protein interaction network

No Interactor

Coexpression network

GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE56094_WT_HRPA-  view
GSE13739_WT_GO  view
GSE13739_EDS16_GO  view
GSE5686_WT_GO  view
GSE56094_WT_PSTDC3000  view
GSE45212_MED14_PSTDC3000_AVRRPT2  view

Differentially expressed condition

20 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE12856	Col, ataf1, control	Col, ataf1, Bg h	-1.88	2.13E-08
GSE17464	Penta, control	Penta, Flg22 2 h	-1.79	4.47E-05
GSE17464	Penta, control	Penta, Flg22 2 h	-1.94	1.69E-05
GSE17500	Col, 35S:AFB1, control 0 h	Col, 35S:AFB1, PstDC3000 24 h	-1.54	4.43E-05
GSE17500	Col, WT, control 0 h	Col, WT, PstDC3000 24 h	-1.66	1.19E-05
GSE17500	Col, miR393, control 0 h	Col, miR393, PstDC3000 24 h	-1.81	1.09E-05
GSE18978	Col, WT, control 24 h	Col, WT, PsmES4326 24 h	-2.25	1.05E-09
GSE21920	Col, WT, mock	Col, WT, Pto HopZ1a 6 h	-1.67	1.26E-05
GSE40544	Col, WT, control	Col, WT, PstDC3000 EV	-1.63	9.73E-08
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 12 h	-2.27	7.78E-14
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 4 h	-1.50	1.02E-10
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 8 h	-2.11	3.16E-13
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 12 h	-1.83	1.66E-12
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 4 h	-1.86	1.66E-12
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 8 h	-1.90	8.44E-13
GSE45214	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 4 h	-1.65	2.15E-10
GSE45214	Col, med16, PstDC3000 AvrRpt2 0 h	Col, med16, PstDC3000 AvrRpt2 4 h	-2.23	7.79E-13
GSE50526	Col, WT, mock 9 h	Col, WT, A. brassicicola 9 h	-2.26	6.66E-06
GSE5520	Col, WT, control 7 h	Col, WT, PstDC3000 7 h	-1.64	5.71E-08
GSE5615	Col, WT, water 4 h	Col, WT, HrpZ 4 h	-1.52	1.54E-07