co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G18940

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0046486: glycerolipid metabolic process	0.00E+00
2	GO:0006907: pinocytosis	0.00E+00
3	GO:0006437: tyrosyl-tRNA aminoacylation	0.00E+00
4	GO:0070125: mitochondrial translational elongation	0.00E+00
5	GO:0045014: negative regulation of transcription by glucose	0.00E+00
6	GO:0001778: plasma membrane repair	0.00E+00
7	GO:1905255: regulation of RNA binding transcription factor activity	0.00E+00
8	GO:0002949: tRNA threonylcarbamoyladenosine modification	0.00E+00
9	GO:0080127: fruit septum development	0.00E+00
10	GO:1900037: regulation of cellular response to hypoxia	0.00E+00
11	GO:0009733: response to auxin	4.36E-05
12	GO:0046620: regulation of organ growth	4.83E-05
13	GO:0009734: auxin-activated signaling pathway	4.94E-05
14	GO:0009926: auxin polar transport	2.22E-04
15	GO:0043686: co-translational protein modification	6.28E-04
16	GO:0034757: negative regulation of iron ion transport	6.28E-04
17	GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic	6.28E-04
18	GO:0009686: gibberellin biosynthetic process	8.02E-04
19	GO:0009658: chloroplast organization	1.13E-03
20	GO:0007018: microtubule-based movement	1.31E-03
21	GO:0001736: establishment of planar polarity	1.35E-03
22	GO:0080009: mRNA methylation	1.35E-03
23	GO:0009786: regulation of asymmetric cell division	1.35E-03
24	GO:0046740: transport of virus in host, cell to cell	1.35E-03
25	GO:0031648: protein destabilization	1.35E-03
26	GO:2000123: positive regulation of stomatal complex development	1.35E-03
27	GO:0043039: tRNA aminoacylation	1.35E-03
28	GO:0006650: glycerophospholipid metabolic process	1.35E-03
29	GO:0061062: regulation of nematode larval development	1.35E-03
30	GO:0010271: regulation of chlorophyll catabolic process	1.35E-03
31	GO:0006432: phenylalanyl-tRNA aminoacylation	1.35E-03
32	GO:0010583: response to cyclopentenone	1.70E-03
33	GO:0048829: root cap development	1.80E-03
34	GO:0009451: RNA modification	2.05E-03
35	GO:0042780: tRNA 3'-end processing	2.23E-03
36	GO:0048575: short-day photoperiodism, flowering	2.23E-03
37	GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic	2.23E-03
38	GO:0045910: negative regulation of DNA recombination	2.23E-03
39	GO:0090506: axillary shoot meristem initiation	2.23E-03
40	GO:0046168: glycerol-3-phosphate catabolic process	2.23E-03
41	GO:0080117: secondary growth	2.23E-03
42	GO:0006518: peptide metabolic process	2.23E-03
43	GO:0010582: floral meristem determinacy	2.39E-03
44	GO:0009887: animal organ morphogenesis	3.07E-03
45	GO:0045017: glycerolipid biosynthetic process	3.23E-03
46	GO:0032456: endocytic recycling	3.23E-03
47	GO:0010239: chloroplast mRNA processing	3.23E-03
48	GO:0007276: gamete generation	3.23E-03
49	GO:0006072: glycerol-3-phosphate metabolic process	3.23E-03
50	GO:0006612: protein targeting to membrane	3.23E-03
51	GO:0006863: purine nucleobase transport	3.84E-03
52	GO:0016567: protein ubiquitination	4.03E-03
53	GO:0009793: embryo development ending in seed dormancy	4.13E-03
54	GO:0009956: radial pattern formation	4.36E-03
55	GO:0009755: hormone-mediated signaling pathway	4.36E-03
56	GO:0048629: trichome patterning	4.36E-03
57	GO:2000038: regulation of stomatal complex development	4.36E-03
58	GO:0042991: transcription factor import into nucleus	4.36E-03
59	GO:0006021: inositol biosynthetic process	4.36E-03
60	GO:0048497: maintenance of floral organ identity	5.60E-03
61	GO:0031365: N-terminal protein amino acid modification	5.60E-03
62	GO:0010438: cellular response to sulfur starvation	5.60E-03
63	GO:0010158: abaxial cell fate specification	5.60E-03
64	GO:0010375: stomatal complex patterning	5.60E-03
65	GO:0080110: sporopollenin biosynthetic process	5.60E-03
66	GO:0009696: salicylic acid metabolic process	5.60E-03
67	GO:0045487: gibberellin catabolic process	5.60E-03
68	GO:0071215: cellular response to abscisic acid stimulus	6.21E-03
69	GO:0016554: cytidine to uridine editing	6.95E-03
70	GO:1902456: regulation of stomatal opening	6.95E-03
71	GO:0042793: transcription from plastid promoter	6.95E-03
72	GO:0048831: regulation of shoot system development	6.95E-03
73	GO:0010190: cytochrome b6f complex assembly	6.95E-03
74	GO:0003006: developmental process involved in reproduction	6.95E-03
75	GO:0071555: cell wall organization	7.00E-03
76	GO:0040008: regulation of growth	7.42E-03
77	GO:0010087: phloem or xylem histogenesis	7.93E-03
78	GO:0030488: tRNA methylation	8.41E-03
79	GO:0009612: response to mechanical stimulus	8.41E-03
80	GO:0031930: mitochondria-nucleus signaling pathway	8.41E-03
81	GO:0048509: regulation of meristem development	8.41E-03
82	GO:0009958: positive gravitropism	8.56E-03
83	GO:0010305: leaf vascular tissue pattern formation	8.56E-03
84	GO:0045892: negative regulation of transcription, DNA-templated	8.78E-03
85	GO:0009736: cytokinin-activated signaling pathway	9.74E-03
86	GO:0015693: magnesium ion transport	9.96E-03
87	GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway	9.96E-03
88	GO:0030497: fatty acid elongation	9.96E-03
89	GO:0010050: vegetative phase change	9.96E-03
90	GO:0010098: suspensor development	9.96E-03
91	GO:0071554: cell wall organization or biogenesis	1.06E-02
92	GO:0032502: developmental process	1.13E-02
93	GO:2000070: regulation of response to water deprivation	1.16E-02
94	GO:0010492: maintenance of shoot apical meristem identity	1.16E-02
95	GO:0000105: histidine biosynthetic process	1.16E-02
96	GO:0009819: drought recovery	1.16E-02
97	GO:0006402: mRNA catabolic process	1.16E-02
98	GO:0010439: regulation of glucosinolate biosynthetic process	1.16E-02
99	GO:0042255: ribosome assembly	1.16E-02
100	GO:0006353: DNA-templated transcription, termination	1.16E-02
101	GO:0009850: auxin metabolic process	1.16E-02
102	GO:0009690: cytokinin metabolic process	1.16E-02
103	GO:0009704: de-etiolation	1.16E-02
104	GO:0009416: response to light stimulus	1.17E-02
105	GO:0071482: cellular response to light stimulus	1.34E-02
106	GO:0007186: G-protein coupled receptor signaling pathway	1.34E-02
107	GO:0032544: plastid translation	1.34E-02
108	GO:0000373: Group II intron splicing	1.52E-02
109	GO:0048589: developmental growth	1.52E-02
110	GO:0009056: catabolic process	1.52E-02
111	GO:0051865: protein autoubiquitination	1.52E-02
112	GO:0048507: meristem development	1.52E-02
113	GO:0009624: response to nematode	1.53E-02
114	GO:0009638: phototropism	1.71E-02
115	GO:1900865: chloroplast RNA modification	1.71E-02
116	GO:0009627: systemic acquired resistance	1.72E-02
117	GO:0048573: photoperiodism, flowering	1.82E-02
118	GO:0009641: shade avoidance	1.91E-02
119	GO:0006298: mismatch repair	1.91E-02
120	GO:0010192: mucilage biosynthetic process	1.91E-02
121	GO:0010629: negative regulation of gene expression	1.91E-02
122	GO:0009870: defense response signaling pathway, resistance gene-dependent	1.91E-02
123	GO:0048765: root hair cell differentiation	2.12E-02
124	GO:0000160: phosphorelay signal transduction system	2.12E-02
125	GO:0009682: induced systemic resistance	2.12E-02
126	GO:0008285: negative regulation of cell proliferation	2.12E-02
127	GO:0043085: positive regulation of catalytic activity	2.12E-02
128	GO:0010311: lateral root formation	2.12E-02
129	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	2.25E-02
130	GO:0006790: sulfur compound metabolic process	2.33E-02
131	GO:0005983: starch catabolic process	2.33E-02
132	GO:0010152: pollen maturation	2.33E-02
133	GO:0010105: negative regulation of ethylene-activated signaling pathway	2.33E-02
134	GO:0006865: amino acid transport	2.45E-02
135	GO:2000028: regulation of photoperiodism, flowering	2.56E-02
136	GO:0010588: cotyledon vascular tissue pattern formation	2.56E-02
137	GO:0010102: lateral root morphogenesis	2.56E-02
138	GO:0009785: blue light signaling pathway	2.56E-02
139	GO:0010223: secondary shoot formation	2.79E-02
140	GO:0010540: basipetal auxin transport	2.79E-02
141	GO:0006302: double-strand break repair	2.79E-02
142	GO:0048467: gynoecium development	2.79E-02
143	GO:0010020: chloroplast fission	2.79E-02
144	GO:0010207: photosystem II assembly	2.79E-02
145	GO:0009933: meristem structural organization	2.79E-02
146	GO:0090351: seedling development	3.02E-02
147	GO:0046854: phosphatidylinositol phosphorylation	3.02E-02
148	GO:0009825: multidimensional cell growth	3.02E-02
149	GO:0006631: fatty acid metabolic process	3.04E-02
150	GO:0006351: transcription, DNA-templated	3.20E-02
151	GO:0009833: plant-type primary cell wall biogenesis	3.27E-02
152	GO:0042546: cell wall biogenesis	3.44E-02
153	GO:0009739: response to gibberellin	3.51E-02
154	GO:0005992: trehalose biosynthetic process	3.52E-02
155	GO:0051017: actin filament bundle assembly	3.52E-02
156	GO:0009636: response to toxic substance	3.71E-02
157	GO:0009965: leaf morphogenesis	3.71E-02
158	GO:0006418: tRNA aminoacylation for protein translation	3.77E-02
159	GO:0006874: cellular calcium ion homeostasis	3.77E-02
160	GO:0048364: root development	4.02E-02
161	GO:0051321: meiotic cell cycle	4.03E-02
162	GO:0016114: terpenoid biosynthetic process	4.03E-02
163	GO:0003333: amino acid transmembrane transport	4.03E-02
164	GO:0005975: carbohydrate metabolic process	4.20E-02
165	GO:0016226: iron-sulfur cluster assembly	4.30E-02
166	GO:2000022: regulation of jasmonic acid mediated signaling pathway	4.30E-02
167	GO:0001944: vasculature development	4.57E-02
168	GO:0009625: response to insect	4.57E-02
169	GO:0010082: regulation of root meristem growth	4.57E-02
170	GO:0009294: DNA mediated transformation	4.57E-02
171	GO:0010584: pollen exine formation	4.85E-02
172	GO:0048443: stamen development	4.85E-02
173	GO:0006284: base-excision repair	4.85E-02
174	GO:0010091: trichome branching	4.85E-02
175	GO:0042127: regulation of cell proliferation	4.85E-02

Rank	GO Term	Adjusted P value
1	GO:0047793: cycloeucalenol cycloisomerase activity	0.00E+00
2	GO:0015267: channel activity	0.00E+00
3	GO:0008922: long-chain fatty acid [acyl-carrier-protein] ligase activity	0.00E+00
4	GO:0052834: inositol monophosphate phosphatase activity	0.00E+00
5	GO:0071633: dihydroceramidase activity	0.00E+00
6	GO:0004401: histidinol-phosphatase activity	0.00E+00
7	GO:0061711: N(6)-L-threonylcarbamoyladenine synthase	0.00E+00
8	GO:0008805: carbon-monoxide oxygenase activity	1.70E-05
9	GO:0001872: (1->3)-beta-D-glucan binding	1.18E-04
10	GO:0010011: auxin binding	2.01E-04
11	GO:0004519: endonuclease activity	3.94E-04
12	GO:0010347: L-galactose-1-phosphate phosphatase activity	6.28E-04
13	GO:0047259: glucomannan 4-beta-mannosyltransferase activity	6.28E-04
14	GO:0005227: calcium activated cation channel activity	6.28E-04
15	GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity	6.28E-04
16	GO:0004831: tyrosine-tRNA ligase activity	6.28E-04
17	GO:0042586: peptide deformylase activity	6.28E-04
18	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	6.28E-04
19	GO:0003723: RNA binding	1.11E-03
20	GO:0045543: gibberellin 2-beta-dioxygenase activity	1.35E-03
21	GO:0010296: prenylcysteine methylesterase activity	1.35E-03
22	GO:0004047: aminomethyltransferase activity	1.35E-03
23	GO:0052832: inositol monophosphate 3-phosphatase activity	1.35E-03
24	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	1.35E-03
25	GO:0008934: inositol monophosphate 1-phosphatase activity	1.35E-03
26	GO:0052833: inositol monophosphate 4-phosphatase activity	1.35E-03
27	GO:0004826: phenylalanine-tRNA ligase activity	1.35E-03
28	GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity	1.35E-03
29	GO:0050736: O-malonyltransferase activity	1.35E-03
30	GO:1901981: phosphatidylinositol phosphate binding	1.35E-03
31	GO:0019156: isoamylase activity	1.35E-03
32	GO:0009884: cytokinin receptor activity	1.35E-03
33	GO:0005034: osmosensor activity	2.23E-03
34	GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity	2.23E-03
35	GO:0016707: gibberellin 3-beta-dioxygenase activity	2.23E-03
36	GO:0042781: 3'-tRNA processing endoribonuclease activity	2.23E-03
37	GO:0003777: microtubule motor activity	2.34E-03
38	GO:0080031: methyl salicylate esterase activity	3.23E-03
39	GO:0045544: gibberellin 20-oxidase activity	3.23E-03
40	GO:0052634: C-19 gibberellin 2-beta-dioxygenase activity	3.23E-03
41	GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed	4.36E-03
42	GO:0010328: auxin influx transmembrane transporter activity	4.36E-03
43	GO:0019199: transmembrane receptor protein kinase activity	4.36E-03
44	GO:0004930: G-protein coupled receptor activity	4.36E-03
45	GO:0005345: purine nucleobase transmembrane transporter activity	4.71E-03
46	GO:0070696: transmembrane receptor protein serine/threonine kinase binding	5.60E-03
47	GO:0008725: DNA-3-methyladenine glycosylase activity	5.60E-03
48	GO:0030983: mismatched DNA binding	6.95E-03
49	GO:0080030: methyl indole-3-acetate esterase activity	6.95E-03
50	GO:0004709: MAP kinase kinase kinase activity	6.95E-03
51	GO:0004556: alpha-amylase activity	6.95E-03
52	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	7.24E-03
53	GO:0043621: protein self-association	7.35E-03
54	GO:0019900: kinase binding	8.41E-03
55	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	8.41E-03
56	GO:0016832: aldehyde-lyase activity	8.41E-03
57	GO:0051753: mannan synthase activity	8.41E-03
58	GO:0004871: signal transducer activity	9.27E-03
59	GO:0004722: protein serine/threonine phosphatase activity	1.00E-02
60	GO:0016759: cellulose synthase activity	1.29E-02
61	GO:0016413: O-acetyltransferase activity	1.45E-02
62	GO:0015035: protein disulfide oxidoreductase activity	1.59E-02
63	GO:0030247: polysaccharide binding	1.82E-02
64	GO:0008047: enzyme activator activity	1.91E-02
65	GO:0004673: protein histidine kinase activity	1.91E-02
66	GO:0004805: trehalose-phosphatase activity	1.91E-02
67	GO:0004222: metalloendopeptidase activity	2.23E-02
68	GO:0000049: tRNA binding	2.33E-02
69	GO:0015095: magnesium ion transmembrane transporter activity	2.56E-02
70	GO:0031072: heat shock protein binding	2.56E-02
71	GO:0000155: phosphorelay sensor kinase activity	2.56E-02
72	GO:0003725: double-stranded RNA binding	2.56E-02
73	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	2.79E-02
74	GO:0008061: chitin binding	3.02E-02
75	GO:0003712: transcription cofactor activity	3.02E-02
76	GO:0005217: intracellular ligand-gated ion channel activity	3.02E-02
77	GO:0004970: ionotropic glutamate receptor activity	3.02E-02
78	GO:0008017: microtubule binding	3.23E-02
79	GO:0004842: ubiquitin-protein transferase activity	3.49E-02
80	GO:0051536: iron-sulfur cluster binding	3.52E-02
81	GO:0008134: transcription factor binding	3.52E-02
82	GO:0043424: protein histidine kinase binding	3.77E-02
83	GO:0008408: 3'-5' exonuclease activity	4.03E-02
84	GO:0010333: terpene synthase activity	4.03E-02
85	GO:0033612: receptor serine/threonine kinase binding	4.03E-02
86	GO:0003964: RNA-directed DNA polymerase activity	4.03E-02
87	GO:0042802: identical protein binding	4.10E-02
88	GO:0009055: electron carrier activity	4.19E-02
89	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	4.30E-02
90	GO:0016760: cellulose synthase (UDP-forming) activity	4.57E-02
91	GO:0030570: pectate lyase activity	4.57E-02
92	GO:0003690: double-stranded DNA binding	4.59E-02
93	GO:0003727: single-stranded RNA binding	4.85E-02
94	GO:0003756: protein disulfide isomerase activity	4.85E-02
95	GO:0015171: amino acid transmembrane transporter activity	4.91E-02

Rank	GO Term	Adjusted P value
1	GO:0043224: nuclear SCF ubiquitin ligase complex	0.00E+00
2	GO:0000408: EKC/KEOPS complex	0.00E+00
3	GO:0009537: proplastid	0.00E+00
4	GO:0032541: cortical endoplasmic reticulum	6.28E-04
5	GO:0000791: euchromatin	6.28E-04
6	GO:0009986: cell surface	7.20E-04
7	GO:0005871: kinesin complex	9.86E-04
8	GO:0009569: chloroplast starch grain	1.35E-03
9	GO:0009513: etioplast	1.35E-03
10	GO:0031357: integral component of chloroplast inner membrane	1.35E-03
11	GO:0030870: Mre11 complex	1.35E-03
12	GO:0009509: chromoplast	2.23E-03
13	GO:0030139: endocytic vesicle	2.23E-03
14	GO:0009508: plastid chromosome	2.72E-03
15	GO:0032585: multivesicular body membrane	3.23E-03
16	GO:0009331: glycerol-3-phosphate dehydrogenase complex	3.23E-03
17	GO:0009898: cytoplasmic side of plasma membrane	4.36E-03
18	GO:0005886: plasma membrane	5.16E-03
19	GO:0009507: chloroplast	5.42E-03
20	GO:0000795: synaptonemal complex	5.60E-03
21	GO:0015629: actin cytoskeleton	6.21E-03
22	GO:0009501: amyloplast	1.16E-02
23	GO:0046658: anchored component of plasma membrane	1.22E-02
24	GO:0009295: nucleoid	1.37E-02
25	GO:0009707: chloroplast outer membrane	2.02E-02
26	GO:0005874: microtubule	2.03E-02
27	GO:0030095: chloroplast photosystem II	2.79E-02
28	GO:0005875: microtubule associated complex	3.27E-02
29	GO:0009654: photosystem II oxygen evolving complex	3.77E-02
30	GO:0009532: plastid stroma	4.03E-02