gene detail

Gene description

TAIR ID: AT2G13790

Short description: somatic embryogenesis receptor-like kinase 4

Pathogen responsiveness: 0.83

General responsiveness: -1.66

Orthologous

Rice: No orthologous gene

Maize: No orthologous gene

Wheat: No orthologous gene

GO biological process

brassinosteroid mediated signaling pathway, protein phosphorylation, cell surface receptor signaling pathway, leaf senescence, regulation of seedling development, negative regulation of cell death, response to chitin, cell death

GO cellular component

plasma membrane, integral component of membrane

GO molecular function

transmembrane receptor protein tyrosine kinase activity, transmembrane receptor protein serine/threonine kinase activity, receptor serine/threonine kinase binding, protein kinase activity, ATP binding

Protein domain

Pfam	PF08263, Leucine rich repeat N-terminal domain
Pfam	PF00560, Leucine Rich Repeat
Pfam	PF00069, Protein kinase domain
SMART	SM00220, S_TKc

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

PATH:ath04626: Plant-pathogen interaction

Transcriptional regulation

Regulator:
AT5G07100, AT5G22570, AT2G46130, AT1G24260

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 2

click to view PPI network

Coexpression network

GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE56094_WT_HRPA-  view
GSE13739_WT_GO  view
GSE13739_EDS16_GO  view
GSE5686_WT_GO  view
GSE56094_WT_PSTDC3000  view
GSE45212_MED14_PSTDC3000_AVRRPT2  view

Differentially expressed condition

39 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE12856	Col, ataf1, control	Col, ataf1, Bg h	2.16	5.14E-07
GSE13739	Col, WT, control 0 h	Col, WT, G.orontii 5 d	1.51	2.59E-06
GSE13739	Col, WT, control 7 d	Col, WT, G.orontii 7 d	2.09	2.00E-10
GSE13739	Col, eds, control 7 d	Col, eds, G.orontii 7 d	1.51	1.06E-06
GSE17464	Laer, JA+Flg22 0 h	Laer, JA+Flg22 1 h	1.79	5.54E-04
GSE17464	Laer, control	Laer, Flg22 1 h	2.05	1.01E-05
GSE17464	Laer, control	Laer, Flg22 2 h	1.58	5.24E-04
GSE17464	Penta, control	Penta, Flg22 2 h	2.36	6.27E-07
GSE17464	Penta, control	Penta, Flg22 2 h	2.05	1.51E-05
GSE17500	Col, WT, control 0 h	Col, WT, PstDC3000 24 h	1.65	4.15E-04
GSE18329	Col, WT, control	Col, WT, Hpa noco2 96 h	1.70	2.13E-10
GSE18329	Col, wrky72_1, control	Col, wrky72_1, Hpa noco2 96 h	1.90	2.78E-11
GSE18329	Col, wrky72_1, control	Col, wrky72_2, Hpa noco2 96 h	1.88	3.53E-11
GSE2538	Col, WT, control	Col, WT, crab shell chitin 30 min	1.95	9.92E-06
GSE2538	Col, WT, control	Col, WT, purified chitin octamer 30 min	1.81	1.97E-05
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 12 h	3.17	5.89E-16
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 4 h	2.05	6.68E-13
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 8 h	3.19	6.88E-16
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 12 h	2.91	1.37E-15
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 4 h	3.45	1.67E-16
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 8 h	3.17	4.32E-16
GSE45214	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 4 h	3.33	2.50E-13
GSE45214	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 4 h	2.69	7.46E-12
GSE45214	Col, med16, PstDC3000 AvrRpt2 0 h	Col, med16, PstDC3000 AvrRpt2 4 h	4.37	2.62E-15
GSE45214	Col, npr1, PstDC3000 AvrRpt2 0 h	Col, npr1, PstDC3000 AvrRpt2 4 h	3.09	1.02E-12
GSE4746	Col, WT, water 30 min	Col, WT, chitooctaose 30 min	1.68	1.15E-03
GSE52979	Col, WT, acetone	Col, WT, acetone flg22_2 h	2.68	3.82E-13
GSE52979	Col, WT, oxo_C14_HSL	Col, WT, oxo_C14_HSL flg22_2 h	2.83	1.69E-13
GSE5615	Col, WT, water 4 h	Col, WT, HrpZ 4 h	1.66	1.01E-06
GSE5685	Col, WT, control 24 h	Col, WT, Ps ES4326 24 h	1.64	6.30E-03
GSE5686	Col, WT, control 5 d	Col, WT, G.orontii 5 d	1.53	3.87E-05
GSE58954	Col, WT, Psm AvrRpt2 0 h	Col, WT, Psm AvrRpt2 6 h	1.59	8.78E-04
GSE6556	Col, gh3.5, control	Col, gh3.5, PstDC3000 AvrRpt2 48 h	1.64	2.26E-04
GSE73351	Ws-4, map65_3, control	Ws-4, map65_3, H.ara Emwa1 3 d	1.50	3.75E-03
GSE8319	Col, WT, control	Col, WT, chitooctaose 30 min	1.66	3.02E-11
GSE9674	Ws-4, AtMYB30 ox, control	Ws-4, AtMYB30 ox, Xanthomonas strain Xcc147 2-4 h	2.11	8.14E-04
GSE9674	Ws-4, AtMYB30 ox, control	Ws-4, AtMYB30 ox, Xanthomonas strain Xcc147 6 h	2.70	4.05E-04
GSE9674	Ws-4, WT, control	Ws-4, WT, Xanthomonas strain Xcc147 2-4 h	1.98	1.68E-03
GSE9674	Ws-4, WT, control	Ws-4, WT, Xanthomonas strain Xcc147 6 h	2.82	3.57E-04