gene detail

Gene description

TAIR ID: AT1G77000

Short description: RNI-like superfamily protein

Pathogen responsiveness: -0.93

General responsiveness: 0.90

Orthologous

Rice: No orthologous gene

Maize: No orthologous gene

Wheat: No orthologous gene

GO biological process

ubiquitin-dependent protein catabolic process, heat acclimation, proteolysis involved in cellular protein catabolic process, negative regulation of lateral root development

GO cellular component

nucleus

GO molecular function

ubiquitin-protein transferase activity

Protein domain

Pfam	PF13516, Leucine Rich repeat
Pfam	PF00646, F-box domain
SMART	SM00367, LRR_CC

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

PATH:ath04120: Ubiquitin mediated proteolysis

Transcriptional regulation

Regulator:
AT3G14230, AT5G61850

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 5

click to view PPI network

Coexpression network

GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE26679_WT_GC  view
GSE13739_WT_GO  view
GSE13739_EDS16_GO  view
GSE5686_WT_GO  view
GSE56094_WT_PSTDC3000  view
GSE26679_EDR1_GC  view

Differentially expressed condition

10 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE17464	Penta, control	Penta, Alternaria brassicicola 3 d	1.79	8.95E-06
GSE17500	Col, WT, control 0 h	Col, WT, PstDC3000 24 h	1.51	1.41E-04
GSE18978	Col, WT, control 24 h	Col, WT, PsmES4326 24 h	1.95	5.52E-08
GSE26679	Col, edr1, GC 0 h	Col, edr1, GC 36 h	1.63	2.53E-07
GSE5520	Col, WT, control 7 h	Col, WT, PstDC3000 7 h	1.51	5.03E-03
GSE56094	Col, WT, control 10 h	Col, WT, PstDC3000 10 h	1.98	1.02E-16
GSE56094	Col, WT, control 12 h	Col, WT, PstDC3000 12 h	1.71	3.80E-13
GSE56094	Col, WT, control 13 h	Col, WT, PstDC3000 13 h	2.16	1.83E-18
GSE6176	Col, WT, control 12 h	Col, WT, PstDC3000 12 h	1.69	4.42E-05
GSE6556	Col, gh3.5, control	Col, gh3.5, PstDC3000 AvrRpt2 48 h	2.18	1.60E-04