co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G77000

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0051928: positive regulation of calcium ion transport	0.00E+00
2	GO:0009877: nodulation	0.00E+00
3	GO:0042906: xanthine transport	0.00E+00
4	GO:0043171: peptide catabolic process	0.00E+00
5	GO:0010219: regulation of vernalization response	0.00E+00
6	GO:0010378: temperature compensation of the circadian clock	0.00E+00
7	GO:0044249: cellular biosynthetic process	0.00E+00
8	GO:0030644: cellular chloride ion homeostasis	0.00E+00
9	GO:0005997: xylulose metabolic process	0.00E+00
10	GO:0009409: response to cold	1.58E-05
11	GO:0007623: circadian rhythm	2.73E-04
12	GO:0080065: 4-alpha-methyl-delta7-sterol oxidation	3.02E-04
13	GO:1900060: negative regulation of ceramide biosynthetic process	3.02E-04
14	GO:0015812: gamma-aminobutyric acid transport	3.02E-04
15	GO:0032958: inositol phosphate biosynthetic process	3.02E-04
16	GO:0006369: termination of RNA polymerase II transcription	3.02E-04
17	GO:0009415: response to water	3.05E-04
18	GO:0009737: response to abscisic acid	3.44E-04
19	GO:0090156: cellular sphingolipid homeostasis	6.60E-04
20	GO:0015720: allantoin transport	6.60E-04
21	GO:0006883: cellular sodium ion homeostasis	6.60E-04
22	GO:0048833: specification of floral organ number	6.60E-04
23	GO:0048255: mRNA stabilization	6.60E-04
24	GO:0015857: uracil transport	6.60E-04
25	GO:1902884: positive regulation of response to oxidative stress	6.60E-04
26	GO:0051170: nuclear import	6.60E-04
27	GO:0030003: cellular cation homeostasis	6.60E-04
28	GO:1902000: homogentisate catabolic process	6.60E-04
29	GO:0009308: amine metabolic process	6.60E-04
30	GO:0009817: defense response to fungus, incompatible interaction	8.83E-04
31	GO:0006811: ion transport	9.97E-04
32	GO:0010218: response to far red light	9.97E-04
33	GO:0009631: cold acclimation	1.06E-03
34	GO:0030029: actin filament-based process	1.07E-03
35	GO:0009072: aromatic amino acid family metabolic process	1.07E-03
36	GO:1902448: positive regulation of shade avoidance	1.07E-03
37	GO:0042344: indole glucosinolate catabolic process	1.07E-03
38	GO:0006954: inflammatory response	1.07E-03
39	GO:0071705: nitrogen compound transport	1.07E-03
40	GO:1901562: response to paraquat	1.07E-03
41	GO:0034976: response to endoplasmic reticulum stress	1.30E-03
42	GO:0006020: inositol metabolic process	1.53E-03
43	GO:0010601: positive regulation of auxin biosynthetic process	1.53E-03
44	GO:0015749: monosaccharide transport	1.53E-03
45	GO:0006809: nitric oxide biosynthetic process	1.53E-03
46	GO:0006882: cellular zinc ion homeostasis	1.53E-03
47	GO:0006572: tyrosine catabolic process	1.53E-03
48	GO:0009414: response to water deprivation	1.54E-03
49	GO:0042542: response to hydrogen peroxide	1.55E-03
50	GO:0009640: photomorphogenesis	1.63E-03
51	GO:0048511: rhythmic process	1.74E-03
52	GO:0009269: response to desiccation	1.74E-03
53	GO:0009644: response to high light intensity	1.80E-03
54	GO:0006646: phosphatidylethanolamine biosynthetic process	2.06E-03
55	GO:0015743: malate transport	2.06E-03
56	GO:0048442: sepal development	2.06E-03
57	GO:0009765: photosynthesis, light harvesting	2.06E-03
58	GO:0022622: root system development	2.06E-03
59	GO:1901409: positive regulation of phosphorylation of RNA polymerase II C-terminal domain	2.06E-03
60	GO:1901002: positive regulation of response to salt stress	2.06E-03
61	GO:0006370: 7-methylguanosine mRNA capping	2.06E-03
62	GO:0010600: regulation of auxin biosynthetic process	2.06E-03
63	GO:0006878: cellular copper ion homeostasis	2.06E-03
64	GO:0048443: stamen development	2.25E-03
65	GO:0048578: positive regulation of long-day photoperiodism, flowering	2.63E-03
66	GO:0043097: pyrimidine nucleoside salvage	2.63E-03
67	GO:0097428: protein maturation by iron-sulfur cluster transfer	2.63E-03
68	GO:0042732: D-xylose metabolic process	3.24E-03
69	GO:0006206: pyrimidine nucleobase metabolic process	3.24E-03
70	GO:0000741: karyogamy	3.24E-03
71	GO:0009651: response to salt stress	3.34E-03
72	GO:0019509: L-methionine salvage from methylthioadenosine	3.90E-03
73	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	3.90E-03
74	GO:0045737: positive regulation of cyclin-dependent protein serine/threonine kinase activity	3.90E-03
75	GO:0045926: negative regulation of growth	3.90E-03
76	GO:0006694: steroid biosynthetic process	3.90E-03
77	GO:0009861: jasmonic acid and ethylene-dependent systemic resistance	3.90E-03
78	GO:0010286: heat acclimation	4.51E-03
79	GO:0010044: response to aluminum ion	4.60E-03
80	GO:0032880: regulation of protein localization	4.60E-03
81	GO:0098869: cellular oxidant detoxification	4.60E-03
82	GO:0009395: phospholipid catabolic process	4.60E-03
83	GO:0048437: floral organ development	4.60E-03
84	GO:0009645: response to low light intensity stimulus	4.60E-03
85	GO:0006333: chromatin assembly or disassembly	4.60E-03
86	GO:0010038: response to metal ion	4.60E-03
87	GO:0009416: response to light stimulus	4.83E-03
88	GO:0016126: sterol biosynthetic process	5.06E-03
89	GO:0035556: intracellular signal transduction	5.31E-03
90	GO:0009061: anaerobic respiration	5.35E-03
91	GO:0010928: regulation of auxin mediated signaling pathway	5.35E-03
92	GO:0009819: drought recovery	5.35E-03
93	GO:0006491: N-glycan processing	5.35E-03
94	GO:0006979: response to oxidative stress	5.36E-03
95	GO:0048573: photoperiodism, flowering	5.97E-03
96	GO:0009827: plant-type cell wall modification	6.13E-03
97	GO:0000160: phosphorelay signal transduction system	6.94E-03
98	GO:0006098: pentose-phosphate shunt	6.95E-03
99	GO:0034765: regulation of ion transmembrane transport	6.95E-03
100	GO:0046916: cellular transition metal ion homeostasis	6.95E-03
101	GO:0048354: mucilage biosynthetic process involved in seed coat development	7.80E-03
102	GO:0007165: signal transduction	8.02E-03
103	GO:0009637: response to blue light	8.39E-03
104	GO:0009641: shade avoidance	8.70E-03
105	GO:0010162: seed dormancy process	8.70E-03
106	GO:0009970: cellular response to sulfate starvation	8.70E-03
107	GO:0055062: phosphate ion homeostasis	8.70E-03
108	GO:0007064: mitotic sister chromatid cohesion	8.70E-03
109	GO:0006995: cellular response to nitrogen starvation	8.70E-03
110	GO:0048441: petal development	8.70E-03
111	GO:0010468: regulation of gene expression	9.39E-03
112	GO:0030148: sphingolipid biosynthetic process	9.63E-03
113	GO:0006816: calcium ion transport	9.63E-03
114	GO:0009682: induced systemic resistance	9.63E-03
115	GO:0052544: defense response by callose deposition in cell wall	9.63E-03
116	GO:0016925: protein sumoylation	1.06E-02
117	GO:0010114: response to red light	1.08E-02
118	GO:0050826: response to freezing	1.16E-02
119	GO:2000012: regulation of auxin polar transport	1.16E-02
120	GO:0032436: positive regulation of proteasomal ubiquitin-dependent protein catabolic process	1.16E-02
121	GO:0008643: carbohydrate transport	1.17E-02
122	GO:0009266: response to temperature stimulus	1.26E-02
123	GO:0048440: carpel development	1.26E-02
124	GO:0007034: vacuolar transport	1.26E-02
125	GO:0000165: MAPK cascade	1.31E-02
126	GO:0019853: L-ascorbic acid biosynthetic process	1.37E-02
127	GO:0071732: cellular response to nitric oxide	1.37E-02
128	GO:0090351: seedling development	1.37E-02
129	GO:0006970: response to osmotic stress	1.44E-02
130	GO:0009585: red, far-red light phototransduction	1.46E-02
131	GO:0006813: potassium ion transport	1.46E-02
132	GO:0009738: abscisic acid-activated signaling pathway	1.63E-02
133	GO:0042742: defense response to bacterium	1.65E-02
134	GO:0016575: histone deacetylation	1.71E-02
135	GO:0006874: cellular calcium ion homeostasis	1.71E-02
136	GO:0009695: jasmonic acid biosynthetic process	1.71E-02
137	GO:0009768: photosynthesis, light harvesting in photosystem I	1.71E-02
138	GO:0080167: response to karrikin	1.72E-02
139	GO:0010431: seed maturation	1.82E-02
140	GO:0003333: amino acid transmembrane transport	1.82E-02
141	GO:0044550: secondary metabolite biosynthetic process	1.91E-02
142	GO:0010017: red or far-red light signaling pathway	1.95E-02
143	GO:0006012: galactose metabolic process	2.07E-02
144	GO:0009693: ethylene biosynthetic process	2.07E-02
145	GO:0071215: cellular response to abscisic acid stimulus	2.07E-02
146	GO:0071369: cellular response to ethylene stimulus	2.07E-02
147	GO:0006396: RNA processing	2.15E-02
148	GO:0045892: negative regulation of transcription, DNA-templated	2.20E-02
149	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	2.33E-02
150	GO:0008284: positive regulation of cell proliferation	2.33E-02
151	GO:0042631: cellular response to water deprivation	2.46E-02
152	GO:0000226: microtubule cytoskeleton organization	2.46E-02
153	GO:0080022: primary root development	2.46E-02
154	GO:0046323: glucose import	2.59E-02
155	GO:0009960: endosperm development	2.59E-02
156	GO:0009958: positive gravitropism	2.59E-02
157	GO:0010197: polar nucleus fusion	2.59E-02
158	GO:0006814: sodium ion transport	2.73E-02
159	GO:0042752: regulation of circadian rhythm	2.73E-02
160	GO:0009408: response to heat	2.80E-02
161	GO:0009556: microsporogenesis	2.87E-02
162	GO:0008654: phospholipid biosynthetic process	2.87E-02
163	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	3.01E-02
164	GO:0006635: fatty acid beta-oxidation	3.01E-02
165	GO:1901657: glycosyl compound metabolic process	3.31E-02
166	GO:0071281: cellular response to iron ion	3.31E-02
167	GO:0005975: carbohydrate metabolic process	3.32E-02
168	GO:0019760: glucosinolate metabolic process	3.46E-02
169	GO:0055114: oxidation-reduction process	3.62E-02
170	GO:0010029: regulation of seed germination	4.07E-02
171	GO:0009617: response to bacterium	4.30E-02
172	GO:0006950: response to stress	4.40E-02
173	GO:0008219: cell death	4.73E-02
174	GO:0048481: plant ovule development	4.73E-02
175	GO:0018298: protein-chromophore linkage	4.73E-02
176	GO:0009813: flavonoid biosynthetic process	4.90E-02

Rank	GO Term	Adjusted P value
1	GO:0047668: amygdalin beta-glucosidase activity	0.00E+00
2	GO:0080083: beta-gentiobiose beta-glucosidase activity	0.00E+00
3	GO:0005272: sodium channel activity	0.00E+00
4	GO:0042907: xanthine transmembrane transporter activity	0.00E+00
5	GO:0010349: L-galactose dehydrogenase activity	0.00E+00
6	GO:0009045: xylose isomerase activity	0.00E+00
7	GO:0004334: fumarylacetoacetase activity	0.00E+00
8	GO:0080082: esculin beta-glucosidase activity	0.00E+00
9	GO:0004567: beta-mannosidase activity	0.00E+00
10	GO:0004482: mRNA (guanine-N7-)-methyltransferase activity	0.00E+00
11	GO:0046523: S-methyl-5-thioribose-1-phosphate isomerase activity	0.00E+00
12	GO:0005358: high-affinity hydrogen:glucose symporter activity	0.00E+00
13	GO:0080081: 4-methylumbelliferyl-beta-D-glucopyranoside beta-glucosidase activity	0.00E+00
14	GO:0005253: anion channel activity	5.93E-05
15	GO:0033857: diphosphoinositol-pentakisphosphate kinase activity	3.02E-04
16	GO:0009679: hexose:proton symporter activity	3.02E-04
17	GO:0000829: inositol heptakisphosphate kinase activity	3.02E-04
18	GO:0010013: N-1-naphthylphthalamic acid binding	3.02E-04
19	GO:0080079: cellobiose glucosidase activity	3.02E-04
20	GO:0017091: AU-rich element binding	3.02E-04
21	GO:0008692: 3-hydroxybutyryl-CoA epimerase activity	3.02E-04
22	GO:0052596: phenethylamine:oxygen oxidoreductase (deaminating) activity	3.02E-04
23	GO:0046870: cadmium ion binding	3.02E-04
24	GO:0000828: inositol hexakisphosphate kinase activity	3.02E-04
25	GO:0004856: xylulokinase activity	3.02E-04
26	GO:0052593: tryptamine:oxygen oxidoreductase (deaminating) activity	3.02E-04
27	GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity	3.02E-04
28	GO:0052595: aliphatic-amine oxidase activity	3.02E-04
29	GO:0070006: metalloaminopeptidase activity	3.02E-04
30	GO:0052594: aminoacetone:oxygen oxidoreductase(deaminating) activity	3.02E-04
31	GO:0015185: gamma-aminobutyric acid transmembrane transporter activity	3.02E-04
32	GO:0005244: voltage-gated ion channel activity	3.02E-04
33	GO:0004525: ribonuclease III activity	3.05E-04
34	GO:0005267: potassium channel activity	3.75E-04
35	GO:0032791: lead ion binding	6.60E-04
36	GO:0005274: allantoin uptake transmembrane transporter activity	6.60E-04
37	GO:0004609: phosphatidylserine decarboxylase activity	6.60E-04
38	GO:0047216: inositol 3-alpha-galactosyltransferase activity	6.60E-04
39	GO:0003857: 3-hydroxyacyl-CoA dehydrogenase activity	6.60E-04
40	GO:0047012: sterol-4-alpha-carboxylate 3-dehydrogenase (decarboxylating) activity	6.60E-04
41	GO:0015180: L-alanine transmembrane transporter activity	6.60E-04
42	GO:0050897: cobalt ion binding	1.06E-03
43	GO:0019948: SUMO activating enzyme activity	1.07E-03
44	GO:0017150: tRNA dihydrouridine synthase activity	1.07E-03
45	GO:0003854: 3-beta-hydroxy-delta5-steroid dehydrogenase activity	1.07E-03
46	GO:0004096: catalase activity	1.07E-03
47	GO:0004300: enoyl-CoA hydratase activity	1.53E-03
48	GO:0015189: L-lysine transmembrane transporter activity	1.53E-03
49	GO:0000254: C-4 methylsterol oxidase activity	1.53E-03
50	GO:0015181: arginine transmembrane transporter activity	1.53E-03
51	GO:0030527: structural constituent of chromatin	1.53E-03
52	GO:0004165: dodecenoyl-CoA delta-isomerase activity	1.53E-03
53	GO:0004707: MAP kinase activity	1.74E-03
54	GO:0015210: uracil transmembrane transporter activity	2.06E-03
55	GO:0005313: L-glutamate transmembrane transporter activity	2.06E-03
56	GO:0042277: peptide binding	2.06E-03
57	GO:0015145: monosaccharide transmembrane transporter activity	2.63E-03
58	GO:0016773: phosphotransferase activity, alcohol group as acceptor	2.63E-03
59	GO:0016702: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	2.63E-03
60	GO:0008270: zinc ion binding	2.65E-03
61	GO:0005247: voltage-gated chloride channel activity	3.24E-03
62	GO:0004629: phospholipase C activity	3.24E-03
63	GO:0000293: ferric-chelate reductase activity	3.24E-03
64	GO:0019137: thioglucosidase activity	3.24E-03
65	GO:0070300: phosphatidic acid binding	3.90E-03
66	GO:0004849: uridine kinase activity	3.90E-03
67	GO:0005261: cation channel activity	3.90E-03
68	GO:0004602: glutathione peroxidase activity	3.90E-03
69	GO:0004435: phosphatidylinositol phospholipase C activity	3.90E-03
70	GO:0000156: phosphorelay response regulator activity	3.99E-03
71	GO:0015140: malate transmembrane transporter activity	4.60E-03
72	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	5.14E-03
73	GO:0004033: aldo-keto reductase (NADP) activity	5.35E-03
74	GO:0102483: scopolin beta-glucosidase activity	5.97E-03
75	GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)	6.13E-03
76	GO:0001104: RNA polymerase II transcription cofactor activity	6.13E-03
77	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	6.95E-03
78	GO:0000989: transcription factor activity, transcription factor binding	6.95E-03
79	GO:0008422: beta-glucosidase activity	9.16E-03
80	GO:0004177: aminopeptidase activity	9.63E-03
81	GO:0005262: calcium channel activity	1.16E-02
82	GO:0004565: beta-galactosidase activity	1.16E-02
83	GO:0008081: phosphoric diester hydrolase activity	1.16E-02
84	GO:0031624: ubiquitin conjugating enzyme binding	1.26E-02
85	GO:0008083: growth factor activity	1.26E-02
86	GO:0008131: primary amine oxidase activity	1.26E-02
87	GO:0003712: transcription cofactor activity	1.37E-02
88	GO:0005217: intracellular ligand-gated ion channel activity	1.37E-02
89	GO:0004970: ionotropic glutamate receptor activity	1.37E-02
90	GO:0031409: pigment binding	1.48E-02
91	GO:0051536: iron-sulfur cluster binding	1.59E-02
92	GO:0004407: histone deacetylase activity	1.59E-02
93	GO:0005506: iron ion binding	1.60E-02
94	GO:0004497: monooxygenase activity	1.72E-02
95	GO:0019706: protein-cysteine S-palmitoyltransferase activity	1.82E-02
96	GO:0003756: protein disulfide isomerase activity	2.20E-02
97	GO:0016301: kinase activity	2.25E-02
98	GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	2.38E-02
99	GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity	2.59E-02
100	GO:0016853: isomerase activity	2.73E-02
101	GO:0048038: quinone binding	3.01E-02
102	GO:0004197: cysteine-type endopeptidase activity	3.16E-02
103	GO:0015297: antiporter activity	3.44E-02
104	GO:0005351: sugar:proton symporter activity	3.52E-02
105	GO:0020037: heme binding	3.54E-02
106	GO:0005200: structural constituent of cytoskeleton	3.61E-02
107	GO:0016168: chlorophyll binding	4.07E-02
108	GO:0005509: calcium ion binding	4.29E-02
109	GO:0030247: polysaccharide binding	4.40E-02
110	GO:0005096: GTPase activator activity	4.90E-02

Rank	GO Term	Adjusted P value
1	GO:0016021: integral component of membrane	1.39E-04
2	GO:0035339: SPOTS complex	3.02E-04
3	GO:0005886: plasma membrane	1.20E-03
4	GO:0000323: lytic vacuole	1.53E-03
5	GO:0005777: peroxisome	1.72E-03
6	GO:0009898: cytoplasmic side of plasma membrane	2.06E-03
7	GO:0032586: protein storage vacuole membrane	2.06E-03
8	GO:0034707: chloride channel complex	3.24E-03
9	GO:0070847: core mediator complex	3.24E-03
10	GO:0005851: eukaryotic translation initiation factor 2B complex	3.24E-03
11	GO:0000815: ESCRT III complex	3.90E-03
12	GO:0000326: protein storage vacuole	6.13E-03
13	GO:0000307: cyclin-dependent protein kinase holoenzyme complex	6.13E-03
14	GO:0000151: ubiquitin ligase complex	6.61E-03
15	GO:0010494: cytoplasmic stress granule	6.95E-03
16	GO:0031090: organelle membrane	6.95E-03
17	GO:0005783: endoplasmic reticulum	9.16E-03
18	GO:0005773: vacuole	1.06E-02
19	GO:0005764: lysosome	1.26E-02
20	GO:0031966: mitochondrial membrane	1.36E-02
21	GO:0030076: light-harvesting complex	1.37E-02
22	GO:0005737: cytoplasm	2.27E-02
23	GO:0010287: plastoglobule	2.48E-02
24	GO:0009522: photosystem I	2.73E-02
25	GO:0031965: nuclear membrane	2.87E-02
26	GO:0009523: photosystem II	2.87E-02
27	GO:0016592: mediator complex	3.16E-02
28	GO:0000785: chromatin	3.16E-02
29	GO:0000932: P-body	3.92E-02
30	GO:0005615: extracellular space	4.03E-02
31	GO:0009941: chloroplast envelope	4.32E-02