Gene: AT1G64860
     

Gene description


TAIR ID: AT1G64860

Short description: sigma factor A

Pathogen responsiveness: 0.58

General responsiveness: 1.84

Orthologous


Rice:

OS08G0163400  

Maize:

GRMZM2G543629  

Wheat: No orthologous gene

GO biological process


cellular response to light stimulus, DNA-templated transcription, initiation, photosystem stoichiometry adjustment, regulation of transcription, DNA-templated, regulation of RNA biosynthetic process, cellular response to redox state


GO cellular component


chloroplast


GO molecular function


transcription factor activity, sequence-specific DNA binding, DNA-directed 5'-3' RNA polymerase activity, DNA binding, sigma factor activity, protein binding, plastid sigma factor activity


Protein domain


PfamPF04542, Sigma-70 region 2
PfamPF04545, Sigma-70, region 4
PfamPF04539, Sigma-70 region 3

Metabolic pathway


Not involved in metabolic pathway


KEGG pathway


Not involved in KEGG pathway


Transcriptional regulation


Regulator:
AT5G61850, AT2G43010

Target:
none

Protein-protein interaction network


The number of partners (degree) is: 3

click to view PPI network

Differentially expressed condition


33 conditions



SeriesControlTreatmentLog2FCAdj. P value
GSE12856Col, WT, controlCol, WT, Bg h-1.613.59E-08
GSE12856Col, ataf1, controlCol, ataf1, Bg h-1.731.29E-08
GSE13739Col, WT, control 0 hCol, WT, G.orontii 6 h-1.523.95E-03
GSE17464Laer, JA+Flg22 0 hLaer, JA+Flg22 1 h-1.781.04E-02
GSE17464Laer, JA+Flg22 0 hLaer, JA+Flg22 2 h-2.357.72E-04
GSE17464Laer, controlLaer, Flg22 2 h-2.233.41E-04
GSE17464Penta, controlPenta, Flg22 2 h-1.941.75E-03
GSE17464Penta, controlPenta, Flg22 2 h-2.821.35E-05
GSE18978Col, WT, control 24 hCol, WT, PsmES4326 24 h-2.547.09E-10
GSE26679Col, WT, GC 0 hCol, WT, GC 36 h-1.859.98E-11
GSE26679Col, edr1, GC 0 hCol, edr1, GC 36 h-1.551.49E-09
GSE37269St0, WT, controlSt0, WT, TEV 21 d-1.877.46E-03
GSE45212Col, WT, PstDC3000 AvrRpt2 0 hCol, WT, PstDC3000 AvrRpt2 12 h-3.664.04E-14
GSE45212Col, WT, PstDC3000 AvrRpt2 0 hCol, WT, PstDC3000 AvrRpt2 8 h-2.587.77E-12
GSE45212Col, med14, PstDC3000 AvrRpt2 0 hCol, med14, PstDC3000 AvrRpt2 12 h-2.782.09E-12
GSE45212Col, med14, PstDC3000 AvrRpt2 0 hCol, med14, PstDC3000 AvrRpt2 4 h-1.839.66E-10
GSE45212Col, med14, PstDC3000 AvrRpt2 0 hCol, med14, PstDC3000 AvrRpt2 8 h-3.291.60E-13
GSE45214Col, med16, PstDC3000 AvrRpt2 0 hCol, med16, PstDC3000 AvrRpt2 4 h-2.733.43E-13
GSE5520Col, WT, control 10 hCol, WT, Cor- 10 h-2.809.54E-04
GSE5520Col, WT, control 7 hCol, WT, PstDC3000 7 h-2.917.29E-05
GSE56094Col, WT, control 10 hCol, WT, PstDC3000 10 h-2.604.98E-13
GSE56094Col, WT, control 11 hCol, WT, PstDC3000 11 h-2.073.84E-09
GSE56094Col, WT, control 12 hCol, WT, PstDC3000 12 h-1.932.87E-08
GSE56094Col, WT, control 13 hCol, WT, PstDC3000 13 h-2.034.82E-09
GSE56094Col, WT, control 7 hCol, WT, PstDC3000 7 h-1.799.93E-07
GSE56094Col, WT, control 7 hCol, WT, hrpA- 7 h-1.782.19E-06
GSE56094Col, WT, control 8 hCol, WT, PstDC3000 8 h-1.943.87E-08
GSE56094Col, WT, control 8 hCol, WT, hrpA- 8 h-1.692.78E-06
GSE56094Col, WT, control 9 hCol, WT, PstDC3000 9 h-1.652.34E-06
GSE58954Col, WT, Psm AvrRpt2 0 hCol, WT, Psm AvrRpt2 6 h-2.371.27E-03
GSE6176Col, WT, control 12 hCol, WT, PstDC3000 12 h-1.893.32E-05
GSE9674Ws-4, AtMYB30 ox, controlWs-4, AtMYB30 ox, Xanthomonas strain Xcc147 6 h-2.464.53E-03
GSE9674Ws-4, WT, controlWs-4, WT, Xanthomonas strain Xcc147 6 h-2.121.19E-02






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