gene detail

Gene description

TAIR ID: AT1G61520

Short description: photosystem I light harvesting complex gene 3

Pathogen responsiveness: -1.63

General responsiveness: 2.79

Orthologous

Rice:

OS02G0197600

Maize:

GRMZM2G010884

Wheat: No orthologous gene

GO biological process

response to high light intensity, response to low light intensity stimulus, protein-chromophore linkage, response to cold, response to cytokinin, photosynthesis, light harvesting in photosystem I

GO cellular component

chloroplast thylakoid membrane, chloroplast, chloroplast thylakoid, chloroplast envelope, membrane, plastoglobule, photosystem I, integral component of membrane, light-harvesting complex, thylakoid

GO molecular function

chlorophyll binding, pigment binding, protein binding, metal ion binding

Protein domain

Pfam	PF00504, Chlorophyll A-B binding protein

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

PATH:ath00196: Photosynthesis - antenna proteins

Transcriptional regulation

Regulator:
AT5G11260, AT1G24260

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 16 (Top20%)

click to view PPI network

Coexpression network

GSE56094_WT_HRPA-  view
GSE13739_WT_GO  view
GSE13739_EDS16_GO  view
GSE56094_WT_PSTDC3000  view

Differentially expressed condition

6 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE18978	Col, WT, control 24 h	Col, WT, PsmES4326 24 h	-1.67	7.91E-07
GSE5520	Col, WT, control 10 h	Col, WT, Cor- 10 h	-1.71	1.63E-03
GSE5520	Col, WT, control 7 h	Col, WT, PstDC3000 7 h	-1.62	4.39E-04
GSE56094	Col, WT, control 10 h	Col, WT, PstDC3000 10 h	-2.35	1.90E-13
GSE56094	Col, WT, control 11 h	Col, WT, PstDC3000 11 h	-1.94	6.12E-10
GSE56094	Col, WT, control 12 h	Col, WT, PstDC3000 12 h	-1.64	9.14E-08