gene detail

Gene description

TAIR ID: AT1G53910

Short description: related to AP2 12

Pathogen responsiveness: -1.84

General responsiveness: -0.83

Orthologous

Rice:

OS02G0782700

Maize: No orthologous gene

Wheat:

TA.2344.1.S1_S_AT

GO biological process

response to hypoxia, regulation of transcription, DNA-templated, transcription, ethylene-activated signaling pathway, regulation of root development, detection of hypoxia

GO cellular component

nucleus, plasma membrane

GO molecular function

protein binding, transcription factor activity, sequence-specific DNA binding

Protein domain

Pfam	PF00847, AP2 domain
SMART	SM00380, AP2

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

Not involved in KEGG pathway

Transcriptional regulation

Regulator:
AT4G18770, AT4G36990

Target:
AT1G71930, AT1G77120, AT2G34710, AT5G48930

Protein-protein interaction network

The number of partners (degree) is: 2

click to view PPI network

Coexpression network

GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE26679_WT_GC  view
GSE13739_EDS16_GO  view
GSE26679_EDR1_GC  view

Differentially expressed condition

5 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE26679	Col, edr1, GC 0 h	Col, edr1, GC 18 h	1.54	1.53E-08
GSE26679	Col, edr1, GC 0 h	Col, edr1, GC 36 h	1.76	8.05E-10
GSE37269	Ei2, WT, control	Ei2, WT, TEV 21 d	-1.65	1.86E-02
GSE37269	St0, WT, control	St0, WT, TEV 21 d	-1.76	8.00E-03
GSE6556	Col, gh3.5, control	Col, gh3.5, PstDC3000 AvrRpt2 48 h	1.83	1.94E-04